Cross reference for [Ontology Name] classes, properties and dataproperties back to ToC

This section provides details for each class and property defined by [Ontology Name].

Classes

AminoacidSequencec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/AminoacidSequence

has super-classes
Sequence c

Annotationc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Annotation

has super-classes
concept c
has sub-classes
Protein Family c

Arabidopsis Mutantc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/At_Mutant

[description] Mutant plant of Arabidopsis
has super-classes
Organism c

ARSc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ARS

has super-classes
NucleotideFeature c

ARS-Consensusc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ARSCons

has super-classes
NucleotideFeature c

Biological_Processc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/BioProc

[description] Biological_Process (GO)
is equivalent to
Biological_Process c
has super-classes
GeneOntologyTerms c

Biological_Processc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/BiologicalProcess

[description] Biological_Process (GO)
has super-classes
GeneOntologyTerms c

CDEIc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/CDEI

has super-classes
CentromereSubFeature c

CDEIIc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/CDEII

has super-classes
CentromereSubFeature c

CDEIIIc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/CDEIII

has super-classes
CentromereSubFeature c

Cellular_Componentc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/CelComp

[description] Cellular Component (GO)
is equivalent to
Cellular_Component c
has super-classes
GeneOntologyTerms c

Cellular_Componentc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/CellularComponent

[description] Cellular Component (GO)
has super-classes
GeneOntologyTerms c

Centromerec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Centromere

has super-classes
NucleotideFeature c

CentromereSubFeaturec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/CentromereSubFeature

has super-classes
NucleotideFeature c
has sub-classes
CDEI c, CDEII c, CDEIII c

Cereal Plant Growth Stagesc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GRO

[description] The controlled vocabulary of growth and developmental stages in various cereal plants. Examples are germination, seedling, booting, flowering, etc. Available only for rice, maize, sorghum, wheat, wheat, oat and barley
has super-classes
PlantOntologyTerms c

Chemicalc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/CHEM

[description] Ontology of chemicals
has super-classes
OntologyTerms c

Chromosomec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Chromosome

[description] Chromosome
has super-classes
FeatureContainer c

Coding Sequencec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/CDS

[description] The coding region of a gene is that portion of a gene's DNA or RNA, composed of exons, that codes for protein.
has super-classes
NucleotideFeature c

Compoundc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Comp

[description] a chemical compound
is equivalent to
Compound c
has super-classes
Molecule c
has sub-classes
Drug c, Metabolite c

Compoundc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Compound

[description] a chemical compound
has super-classes
Molecule c
has sub-classes
Drug c, Metabolite c

Diseasec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Disease

[description] Human Diseases
has super-classes
ExpressionAffector c

DNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/DNA

[description] DNA
has super-classes
Polynucleotide c
has sub-classes
dsDNA c, ssDNA c

Dosage Growth Defectc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GIDGD

has super-classes
Genetic Interaction c

Dosage Lethalityc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GIDL

has super-classes
Genetic Interaction c

Dosage Rescuec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GIDR

has super-classes
Genetic Interaction c

Drugc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Drug

[description] a medical drug
has super-classes
Compound c
Compound c

dsDNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dDNA

[description] Double stranded deoxyribonucleic acid
has super-classes
DNA c

ECorgc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ECorg

[description] Used by Brenda, a number belongs to one EC and one Organism
has super-classes
Enzyme Classification c

Environmentc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Environment

[description] Treatment or surrounding conditions
has super-classes
Space c

Enzymec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Enzyme

[description] An Enzyme is a Protein that catalyzes a chemical reaction.
has super-classes
Protein c

Enzyme Classificationc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/EC

[description] All Enzymes are ordered by Classes(e.g. 1.2.3.2)
has super-classes
PlantOntologyTerms c
has sub-classes
ECorg c

ESTc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/EST

[description] "single-pass" cDNA sequence, or Expressed Sequence Tag
has super-classes
Nucleic Acid Sequence c

Experimentc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Experiment

[description] Scientific experiment
has super-classes
concept c
has sub-classes
MicroArrayExperiment c

ExpressionAffectorc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ExpressionAffector

has super-classes
concept c
has sub-classes
Disease c

FeatureContainerc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/FeatureContainer

[description] These concepts serve containers for other nucleotide sequence features
has super-classes
NucleotideFeature c
has sub-classes
Chromosome c, Scaffold c

Genec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Gene

[description] Gene
has super-classes
NucleotideFeature c

GeneCassettec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GeneCassette

has super-classes
NucleotideFeature c

GeneOntologyTermsc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GeneOntologyTerms

has super-classes
OntologyTerms c
has sub-classes
Biological_Process c, Biological_Process c, Cellular_Component c, Cellular_Component c, Molecular_Function c, Molecular_Function c

Genetic Interactionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GenInt

has super-classes
Interaction c
has sub-classes
Dosage Growth Defect c, Dosage Lethality c, Dosage Rescue c, Phenotypic Enhancemant c, Phenotypic Suppression c, Synthetic Growth Defect c, Synthetic Haploinsufficiency c, Synthetic Lethality c, Synthetic Rescue c

Groupc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Group

has super-classes
concept c
has sub-classes
Kegg Ortholog Group c

Hierarchy Nodec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/HierarchyNode

[description] a node in a graph hierarchy dendrogram
has super-classes
concept c

InfoPolymerc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/InfoPolymer

[description] A polymeric molecule that contains sequence information.
has super-classes
Molecule c
has sub-classes
Polynucleotide c, Polypeptide c

Interactionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Interaction

has super-classes
concept c
has sub-classes
Genetic Interaction c, Physical Interaction c

Kegg Ortholog Groupc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/KO

[description] Kegg Ortholog Group of sequence similarity
has super-classes
Group c
has sub-classes
Kegg Orthologs Enzyme c, Kegg Orthologs Gene c, Kegg Orthologs Protein c

Kegg Orthologs Enzymec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/KOEN

[description] Kegg Ortholog Group of sequence similarity
has super-classes
Kegg Ortholog Group c

Kegg Orthologs Genec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/KOGE

[description] Kegg Ortholog Group of sequence similarity
has super-classes
Kegg Ortholog Group c

Kegg Orthologs Proteinc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/KOPR

[description] Kegg Ortholog Group of sequence similarity
has super-classes
Kegg Ortholog Group c

Localizablec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Localizable

[description] An abstract or physical concept that can have a location.
has super-classes
concept c
has sub-classes
Participant c, Process c, Space c

Long_terminal_repeatc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/LTR

has super-classes
TRRSubFeature c

MatingLocusc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MatingLocus

has super-classes
NucleotideFeature c

MatingLocusSubFeaturec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MatingLocusSubFeature

has super-classes
NucleotideFeature c
has sub-classes
WRegion c, XRegion c, YRegion c, Z1Region c, Z2Region c

Medical Subject Headingsc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeSH

[description] NLM's controlled vocabulary, used to characterize the content of MEDLINE citations
has super-classes
OntologyTerms c

MeSH Conceptc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeshConcept

[description] A concept from MeSH
has super-classes
MESH-related term c

MeSH Descriptorc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeshDescriptor

[description] A descriptor record from MeSH
has super-classes
MESH-related term c

MeSH Pharmacological Actionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeshPharmacologicalAction

[description] A parmacological action from MeSH
has super-classes
MESH-related term c

MeSH Qualifierc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeshQualifier

[description] A qualifier from MeSH
has super-classes
MESH-related term c

MeSH Semantic Typec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeshSemanticType

[description] A semantic type from MeSH
has super-classes
MESH-related term c

MeSH Substancec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeshSubstance

[description] A substance from MeSH
has super-classes
MESH-related term c

MeSH Supplementary Recordc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeshSupplementalRecord

[description] A supplementary record from MeSH
has super-classes
MESH-related term c

MESH-related termc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MeshTerm

[description] A MESH-related term
has super-classes
OntologyTerms c
has sub-classes
MeSH Concept c, MeSH Descriptor c, MeSH Pharmacological Action c, MeSH Qualifier c, MeSH Semantic Type c, MeSH Substance c, MeSH Supplementary Record c

MetabolicPathwayc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MetabolicPathway

[description] series of chemical reactions occurring within a cell.
has super-classes
Pathway c

Metabolitec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Metabolite

[description] Metabolite
has super-classes
Compound c
Compound c

MicroArrayExperimentc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MicroArrayExperiment

[description] Microarray experiment
has super-classes
Experiment c

Molecular_Functionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MolFunc

[description] Molecular Function (GO)
is equivalent to
Molecular_Function c
has super-classes
GeneOntologyTerms c

Molecular_Functionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MolecularFunction

[description] Molecular Function (GO)
has super-classes
GeneOntologyTerms c

Moleculec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Molecule

[description] A molecule is comprised of one or more atoms that form a single component through covalent bonds.
has super-classes
Participant c
has sub-classes
Compound c, Compound c, InfoPolymer c

Molecule Complexc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MolCmplx

[description] An entity comprised of one or more molecules
is equivalent to
Molecule Complex c
has super-classes
Participant c
has sub-classes
Protein c

Molecule Complexc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MoleculeComplex

[description] An entity comprised of one or more molecules
has super-classes
Participant c
has sub-classes
Protein c

mRNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MRNA

[description] Messenger RNA
has super-classes
RNA c

MultiGeneLocusc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/MultiGeneLocus

has super-classes
NucleotideFeature c

ncRNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ncRNA

has super-classes
RNA c
has sub-classes
rRNA c, siRNA c, snRNA c, snoRNA c, tRNA c

ncRNA-Genec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/NcRNAGene

has super-classes
NucleotideFeature c
has sub-classes
rRNA-Gene c, snRNA-Gene c, snoRNA-Gene c, tRNA-Gene c

NonTranscribedRegionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/NonTranscribedRegion

has super-classes
NucleotideFeature c

Nucleic Acid Sequencec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/NASEQ

[description] Nucleic Acid Sequence
has super-classes
Sequence c
has sub-classes
EST c, Probe Set Target Sequence c

NucleotideFeaturec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/NucleotideFeature

has super-classes
Sequence Feature c
has sub-classes
ARS c, ARS-Consensus c, Centromere c, CentromereSubFeature c, Coding Sequence c, FeatureContainer c, Gene c, GeneCassette c, MatingLocus c, MatingLocusSubFeature c, MultiGeneLocus c, NonTranscribedRegion c, ORF c, Operon c, Pseudogene c, Quantitative Trait Locus c, Repeat c, Retrotransposon c, SubtelomereSubFeature c, TRRSubFeature c, TelomericRegion c, Transcription factor binding site c, ncRNA-Gene c

OntologyTermsc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/OntologyTerms

has super-classes
concept c
has sub-classes
Chemical c, GeneOntologyTerms c, MESH-related term c, Medical Subject Headings c, Phenotype Ontology c, PlantOntologyTerms c, Trait Ontology c

Operonc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Operon

[description] An operon is comprised of a promoter, an operator, one or more genes and a terminator.
has super-classes
NucleotideFeature c

ORFc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ORF

[description] Open reading frame
has super-classes
NucleotideFeature c

Organismc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Organism

[description] Organism.
has super-classes
Taxon c
has sub-classes
Arabidopsis Mutant c, Plant Cultivar c

Participantc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Participant

[description] A molecular biological entity that can participate in a Process or in an Interaction.
has super-classes
Localizable c
has sub-classes
Molecule c, Molecule Complex c, Molecule Complex c

Pathwayc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Path

[description] Biological Pathway
has super-classes
ProcessSequence c
has sub-classes
MetabolicPathway c, SignallingPathway c

Phenotype Ontologyc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/AHDPO

[description] Arabidopsis Hormone Database, Phenotype Ontology http://nar.oxfordjournals.org/cgi/content/full/37/suppl_1/D975?ck=nck
has super-classes
OntologyTerms c

Phenotypic Enhancemantc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GIPE

has super-classes
Genetic Interaction c

Phenotypic Suppressionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GIPS

has super-classes
Genetic Interaction c

Physical Interactionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/PhysInt

has super-classes
Interaction c

Plant Cultivarc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Cultivar

[description] Variation of a plant species arising in cultivation and propagated for some unusual characteristic, such as leaf colour or shape.
has super-classes
Organism c

Plant Growth and Developmental Stage (PO)c back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/PO_GrowthStage

[description] TA controlled vocabulary of growth and developmental stages in various plants and their relationships. Examples are germination, seedling, flowering, etc.
has super-classes
PlantOntologyTerms c

Plant Hormonec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Plant_Hormone

[description] Plant Hormone treatment
has super-classes
Treatment c

Plant Structure (PO)c back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/PO_PlantStructure

[description] The controlled vocabulary of plant structures representing organs, tissue and cell types. Examples are stamen, gynoecium, petal, parenchyma, guard cell, etc
has super-classes
PlantOntologyTerms c

plant temporal stagesc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/POTempStage

[description] ontology describing Plant temporal stages (PO)
has super-classes
PlantOntologyTerms c

PlantOntologyTermsc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/PlantOntologyTerms

has super-classes
OntologyTerms c
has sub-classes
Cereal Plant Growth Stages c, Enzyme Classification c, Plant Growth and Developmental Stage (PO) c, Plant Structure (PO) c, plant temporal stages c

Polynucleotidec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Polynucleotide

[description] A polymer of nucleotides
has super-classes
InfoPolymer c
has sub-classes
DNA c, RNA c

Polypeptidec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Polypeptide

[description] A polymer of aminoacids.
has super-classes
InfoPolymer c

PolypeptideFeaturec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/PolypeptideFeature

has super-classes
Sequence Feature c
has sub-classes
Protein Domain c, Protein3DStructure c

Position specific Weight Matrixc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/PWM

[description] pwm represents a scoring scheme for potential dna binding sites of a transcription factor
has super-classes
concept c

Probe Set Target Sequencec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TARGETSEQ

[description] The relatively small less than 600 nucleotide sequence segment from the 3' end of the consensus or the exemplar sequence; used to design the probes for any given probe set.
has super-classes
Nucleic Acid Sequence c

Processc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Process

[description] A Process
has super-classes
Localizable c
has sub-classes
Reaction c, Transport c

ProcessSequencec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ProcessSequence

has super-classes
concept c
has sub-classes
Pathway c

Proteinc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Protein

[description] A protein is comprised of one or more Polypeptides and potentially other molecules.
has super-classes
Molecule Complex c
Molecule Complex c
has sub-classes
Enzyme c, Protein complex c, Protein complex c, Structural Protein c, Transcription factor c, Transporter c

Protein complexc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Protcmplx

[description] Protein Complex consists of several subunits
is equivalent to
Protein complex c
has super-classes
Protein c

Protein complexc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ProteinComplex

[description] Protein Complex consists of several subunits
has super-classes
Protein c

Protein Domainc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ProtDomain

[description] A Protein domain
has super-classes
PolypeptideFeature c

Protein Familyc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ProtFam

[description] Proteins which share a common family
has super-classes
Annotation c

Protein3DStructurec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Protein3DStructure

[description] 3-dimensional structure of a protein
has super-classes
PolypeptideFeature c

Pseudogenec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Pseudogene

has super-classes
NucleotideFeature c

Publicationc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Publication

[description] none
has super-classes
concept c

PublicationListc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/PublicationList

[description] List of publications
has super-classes
concept c

Quantitative Trait Locusc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/QTL

[description] Quantitative Trait Locus
has super-classes
NucleotideFeature c

Reactionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Reaction

[description] a chemical reaction
has super-classes
Process c

Repeatc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Repeat

has super-classes
NucleotideFeature c

Retrotransposonc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Retrotransposon

has super-classes
NucleotideFeature c

RNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/RNA

[description] Ribonucleic Acid. A polymer of riboses with pyrimidine and purine bases.
has super-classes
Polynucleotide c
has sub-classes
mRNA c, ncRNA c

rRNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/RRNA

has super-classes
ncRNA c

rRNA-Genec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/RRNAGene

has super-classes
ncRNA-Gene c

Scaffoldc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Scaffold

[description] A sequence region which has no physical mapping to one of the main linkage groups (Chromosomes)
has super-classes
FeatureContainer c

Sequencec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Sequence

has super-classes
concept c
has sub-classes
AminoacidSequence c, Nucleic Acid Sequence c

Sequence Featurec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SequenceFeature

has super-classes
concept c
has sub-classes
NucleotideFeature c, PolypeptideFeature c

Sigma factorc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SF

[description] A Sigma factor is a transcription factor that binds to the TATA box of a promoter, thereby allowing the Polymerase to transcribe the downstream DNA sequence.
has super-classes
Transcription factor c

SignallingPathwayc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SignallingPathway

[description] processes of signal transduction involve ordered sequences of biochemical reactions inside the cell, which are carried out by enzymes and activated by second messengers, resulting in a signal transduction pathway.
has super-classes
Pathway c

siRNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SIRNA

[description] Small Interfering RNA
has super-classes
ncRNA c

snoRNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SNORNA

has super-classes
ncRNA c

snoRNA-Genec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SNORNAGene

has super-classes
ncRNA-Gene c

snRNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SNRNA

has super-classes
ncRNA c

snRNA-Genec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SNRNAGene

has super-classes
ncRNA-Gene c

Spacec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Space

has super-classes
Localizable c
has sub-classes
Environment c, Tissue c

ssDNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/sDNA

[description] Single stranded deoxyribonucleic acid
has super-classes
DNA c

Structural Proteinc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/StrucProt

[description] A protein that serves structural purposes.
has super-classes
Protein c

SubtelomereSubFeaturec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/SubtelomereSubFeature

has super-classes
NucleotideFeature c
has sub-classes
SubtelomericBindingSite c, XElementCombinatorialRepeat c

SubtelomericBindingSitec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/STBS

has super-classes
SubtelomereSubFeature c

Synthetic Growth Defectc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GISGD

has super-classes
Genetic Interaction c

Synthetic Haploinsufficiencyc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GISHI

has super-classes
Genetic Interaction c

Synthetic Lethalityc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GISL

has super-classes
Genetic Interaction c

Synthetic Rescuec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/GISR

has super-classes
Genetic Interaction c

Taxonc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Taxon

[description] Any Taxonomic Entity such as species families etc
has super-classes
concept c
has sub-classes
Organism c

TelomericRegionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TRR

has super-classes
NucleotideFeature c

TelomericRepeatc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TelomericRepeat

has super-classes
TRRSubFeature c

Timepointc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Timepoint

[description] A point in time where an observation is taken
has super-classes
concept c

Tissuec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Tissue

[description] Part of an organism consisting of an aggregate of cells having a similar structure and function
has super-classes
Space c

Trait Ontologyc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TO

[description] ontology describing the different Traits which can affect plants (TO)
has super-classes
OntologyTerms c

Transcription factorc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TF

[description] A transcription factor is a protein that regulates the expression of one or more gene by binding to an associated DNA region (see TFBS).
has super-classes
Protein c
has sub-classes
Sigma factor c

Transcription factor binding sitec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TFBS

[description] A sequence where a transcription factor binds to the DNA
has super-classes
NucleotideFeature c

Transportc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Transport

has super-classes
Process c

Transporterc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Transporter

[description] A protein that transports compounds through membranes between different cellular compartments.
has super-classes
Protein c

Treatmentc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Treatment

[description] Any biotic or abiotic treatment like pathogens, wound or drought to any host
has super-classes
concept c
has sub-classes
Plant Hormone c

tRNAc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TRNA

[description] Transfer RNA
has super-classes
ncRNA c

tRNA-Genec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TRNAGene

has super-classes
ncRNA-Gene c

TRRSubFeaturec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/TRRSubFeature

has super-classes
NucleotideFeature c
has sub-classes
Long_terminal_repeat c, TelomericRepeat c, XCore c, YPrimeElement c

WRegionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/WRegion

has super-classes
MatingLocusSubFeature c

XCorec back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/XCore

has super-classes
TRRSubFeature c

XElementCombinatorialRepeatc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/STR

has super-classes
SubtelomereSubFeature c

XRegionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/XRegion

has super-classes
MatingLocusSubFeature c

YPrimeElementc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/YPrime

has super-classes
TRRSubFeature c

YRegionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/YRegion

has super-classes
MatingLocusSubFeature c

Z1Regionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Z1Region

has super-classes
MatingLocusSubFeature c

Z2Regionc back to ToC or Class ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/Z2Region

has super-classes
MatingLocusSubFeature c

Object Properties

acetylated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/acetylated_by

has super-properties
post-translationally_modified_by op
is inverse of
acetylates op

acetylatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/acetylates

has super-properties
concepts relation op
is inverse of
acetylated_by op

activated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ac_by

[description] activation of a gene's expression by a transcription factor

has characteristics: asymmetric

has equivalent properties
activated_by op
has super-properties
regulated_by op
regulated_by op
is inverse of
activates op

activated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/activated_by

[description] activation of a gene's expression by a transcription factor

has characteristics: asymmetric

has equivalent properties
activated_by op
has super-properties
regulated_by op
is inverse of
activates op

activatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/activates

has super-properties
concepts relation op
is inverse of
activated_by op, activated_by op

adjacent_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/adjacent_to

[description] n C adjacent to C' if and only if: given any instance c that instantiates C at a time t, there is some c' such that: c' instantiates C' at time t and c and c' are in spatial proximity
has super-properties
has_relative_position op
is inverse of
adjacent_to op, adjacent_to op

annotatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/annotates

has super-properties
concepts relation op
is inverse of
is_annotated_by op

antoop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/anto

has super-properties
concepts relation op

associated_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/asso_wi

has super-properties
concepts relation op

attop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/att

has super-properties
concepts relation op

binds_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/bi_to

[description] Molecule->Molecule
has super-properties
interacts_physically_with op
is inverse of
bound by op

bound byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/bound_by

has super-properties
concepts relation op
is inverse of
binds_to op

broader thanop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/broader

[description] one term is broader than another (SKOS?)
has super-properties
concepts relation op

catalyzed_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ca_by

[description] catalyzation of a reaction by a catalyst

has characteristics: asymmetric

has equivalent properties
catalyzed_by op
has super-properties
has_agent op
is inverse of
catalyzes op

catalyzed_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/catalyzed_by

[description] catalyzation of a reaction by a catalyst

has characteristics: asymmetric

has equivalent properties
catalyzed_by op
has super-properties
has_agent op
is inverse of
catalyzes op

catalyzesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/catalyzes

[description] Enzyme->Reaction

has characteristics: asymmetric

has super-properties
modifies op
is inverse of
catalyzed_by op, catalyzed_by op, is catalyzed by op

causes_lethality_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_sl

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
lethality caused with by op

chemical_relationshipop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/chem_rel

has super-properties
has_physical_relation_with op
has_physical_relation_with op
has sub-properties
has_chemical_functional_parent op, has_chemical_parent_hybride op, intermediate_of op, is_chemical_substituent_group_from op, is_conjugate op, is_enantiomer_of op, is_tautomer_of op

cofactored_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/co_by

has super-properties
has_participant op

colocalized withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/colocalized_with

has super-properties
concepts relation op
is inverse of
colocalized_with op

colocalized_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/coloc

has characteristics: symmetric, transitive, reflexive

has super-properties
has_relative_position op
is inverse of
colocalized with op

consumed_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/consumed_by

has characteristics: asymmetric

has equivalent properties
consumed_by op
has super-properties
taken_by op
is inverse of
consumes op

consumed_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/cs_by

has characteristics: asymmetric

has equivalent properties
consumed_by op
has super-properties
taken_by op
is inverse of
consumes op

consumesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/consumes

has super-properties
concepts relation op
is inverse of
consumed_by op, consumed_by op

contributes_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/contrib

has super-properties
has_physical_relation_with op
has_physical_relation_with op
is inverse of
has contributor op

cooccurs_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/cooc_wi

has equivalent properties
cooccurs_with op
has super-properties
concepts relation op

cooccurs_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/occurs_with

has equivalent properties
cooccurs_with op
has super-properties
concepts relation op

correlated_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/correlated_with

has super-properties
mathematical_relationship op
has sub-properties
direct_correlation_with op, inverse_correlation_with op

demethylated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/demethylated_by

has super-properties
post-translationally_modified_by op
is inverse of
demethylates op

demethylatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/demethylates

has super-properties
concepts relation op
is inverse of
demethylated_by op

dephosphorylated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dephosphorylated_by

has super-properties
post-translationally_modified_by op
is inverse of
dephosphorylates op

dephosphorylatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dephosphorylates

has super-properties
concepts relation op
is inverse of
dephosphorylated_by op

derop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/der

has super-properties
concepts relation op

derivable toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/derivable_to

has super-properties
concepts relation op
is inverse of
derives_from op

derives_fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/derives_from

[description] Derivation on the instance level (*derives_from*) holds between distinct material continuants when one succeeds the other across a temporal divide in such a way that at least a biologically significant portion of the matter of the earlier continuant is inherited by the later. We say that one class C derives_from class C' if instances of C are connected to instances of C' via some chain of instance-level derivation relations. Example: osteocyte derives_from osteoblast. Formally: C derives_immediately_from C' if and only if: given any c and any t, if c instantiates C at time t, then there is some c' and some t', such that c' instantiates C' at t' and t' earlier-than t and c *derives_from* c'. C derives_from C' if and only if: there is an chain of immediate derivation relations connecting C to C'.

has characteristics: asymmetric

has super-properties
has_physical_relation_with op
has_physical_relation_with op
is inverse of
derivable to op

devop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dev

has super-properties
concepts relation op

develops_fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/develops_from

[description] Used when a plant structure (the child) develops from another plant structure (the parent)
has super-properties
concepts relation op

direct_correlation_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/direct_correlation_with

[description] Entities that are directly correlated (+ve coefficiant)
has super-properties
correlated_with op

dissociated_fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/di_fr

has super-properties
concepts relation op

does not annotateop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/does_not_annotate

has super-properties
concepts relation op
is inverse of
not_annotated_with op

dosage growth defectop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dosage_growth_defect

has super-properties
concepts relation op
is inverse of
dosage_growth_defect op

dosage lethalityop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dosage_lethality

has super-properties
concepts relation op
is inverse of
dosage_lethality op

dosage rescueop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dosage_rescue

has super-properties
concepts relation op
is inverse of
dosage_rescue op

dosage_growth_defectop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_dgd

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
dosage growth defect op

dosage_lethalityop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_dl

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
dosage lethality op

dosage_rescueop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_dr

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
dosage rescue op

effluxes_fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/do_by

has characteristics: asymmetric

has super-properties
given_by op
is inverse of
is efflux from op

elongatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/elongates

[description] Catalysis of chain elongation

has characteristics: asymmetric

has super-properties
physical_IB_relation op
is inverse of
is elongated by op

encodesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/enc

[description] Gene->Protein

has characteristics: asymmetric

has equivalent properties
encodes op
has super-properties
information_transduction op
is inverse of
is_encoded_by op, is encoded by op

encodesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/encodes

[description] Gene->Protein

has characteristics: asymmetric

has equivalent properties
encodes op
has super-properties
information_transduction op
is inverse of
is_encoded_by op, is encoded by op

enhances_phenotype_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_pe

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
phenotype enhanced by op

enz_intop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/enz_int

[description] Two compounds have an unspecified enzymatic interaction
has super-properties
interacts_physically_with op

Errorop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/err

has super-properties
concepts relation op

expressed_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ex_by

[description] interactions via DNA binding
has equivalent properties
expressed_by op
has super-properties
regulated_by op
regulated_by op

expressed_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/expressed_by

[description] interactions via DNA binding
has equivalent properties
expressed_by op
has super-properties
regulated_by op

expressed_duringop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ex_du

[description] Gene->growth and developmental stages

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
has expression of op

expressed_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ex_in

[description] Gene->morphology, organs, tissue and cell types

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
has expression of op

given_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/given_by

has characteristics: asymmetric

has super-properties
concepts relation op
has sub-properties
effluxes_from op, produced_by op, produced_by op
is inverse of
gives op

givesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gives

has characteristics: asymmetric

has super-properties
concepts relation op
has sub-properties
produces op
is inverse of
given_by op

glycosylated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/glycosylated_by

has super-properties
post-translationally_modified_by op
is inverse of
glycosylates op

glycosylatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/glycosylates

has super-properties
concepts relation op
is inverse of
glycosylated_by op

growth defect inflicted byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/growth_defect_inflicted_by

has super-properties
concepts relation op
is inverse of
inflicts_growth_defect_on op

haploinsufficiency inflicted byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/haploinsufficiency_inflicted_by

has super-properties
concepts relation op
is inverse of
inflicts_haploinsufficiency_on op

has active participantop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_active_participant

has super-properties
concepts relation op
is inverse of
participates_actively_in op

has activityop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/hasActivity

[description] this thing exhibits that activity
has super-properties
concepts relation op

has chemical substituent groupop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_chemical_substituent_group

has super-properties
concepts relation op
is inverse of
is_chemical_substituent_group_from op

has contributorop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_contributor

has super-properties
concepts relation op
is inverse of
contributes_to op

has expression ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_expression_of

has super-properties
concepts relation op
is inverse of
expressed_during op, expressed_in op

has instanceop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_instance

has super-properties
concepts relation op
is inverse of
instance_of op

has integral partop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_integral_part

has super-properties
concepts relation op
is inverse of
integral_part_of op

has intermediateop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_intermediate

has super-properties
concepts relation op
is inverse of
intermediate_of op

has memberop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_member

has super-properties
concepts relation op
is inverse of
member_of op

has not participantop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_not_participant

has super-properties
concepts relation op
is inverse of
participates_not op

has occurrence ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_occurrence_of

has super-properties
concepts relation op
is inverse of
occurs_in op, occurs_in op

has passive participantop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_passive_participant

has super-properties
concepts relation op
is inverse of
participates_passively_in op

has proper partop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_proper_part

has super-properties
concepts relation op
is inverse of
proper_part_of op

has relative sequence positionop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_relative_sequence_position

has super-properties
concepts relation op
is inverse of
has_relative_sequence_position op

has subfeatureop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_subfeature

has super-properties
concepts relation op
is inverse of
is_subfeature_of op

has_agentop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_agent

[description] As for has_participant, but with the additional condition that the component instance is causally active in the relevant process

has characteristics: asymmetric

has super-properties
has_participant op
has sub-properties
catalyzed_by op, catalyzed_by op
is inverse of
is agent of op

has_attributive_relation_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_attributive_relation_with

has super-properties
concepts relation op
has sub-properties
has_feature op, has_function op, has_observed_phenotype op, has_pwm op, has_sequence op, is_annotated_by op, member_of op, not_annotated_with op

has_chemicalop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/hs_ch

[description] has Ec or CAS ID

has characteristics: asymmetric

has super-properties
physical_IB_relation op
is inverse of
is chemical in op

has_chemical_functional_parentop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_chem_f_p

[description] Used to denote the relationship between two molecular entities (or classes of entities), one of which possesses one or more chacteristic groups from which the other can be derived by functional modification. This relationship is especially useful to demonstrate the relationships between a number of functionalised entities and a common less-functionalised parent.

has characteristics: asymmetric

has super-properties
chemical_relationship op
is inverse of
is chemical functional parent of op

has_chemical_parent_hybrideop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/h_chem_p_hybride

[description] Used to denote the relationship between an entity and its parent hydride (defined by IUPAC as "an unbranched acyclic or cyclic structure or an acyclic/cyclic structure having a semisystematic or trivial name to which only hydrogen atoms are attached").

has characteristics: asymmetric

has super-properties
chemical_relationship op
is inverse of
is chemical parent hybride op

has_featureop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_feature

[description] Sequence->SequenceFeature

has characteristics: asymmetric, transitive

has super-properties
has_attributive_relation_with op
has sub-properties
has_nucleotide_feature op, has_protein_domain op
is inverse of
is feature of op

has_functionop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_function

has characteristics: asymmetric

has super-properties
has_attributive_relation_with op
is inverse of
is function of op

has_mutated_geneop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_mutated_gene

[description] has_mutated_gene relates an organism/cultivar/mutant with a reference/canonical gene Interpretation: Organism has a mutant version of some reference/canonical gene, where the reference gene would be regarded one from a public database.
has super-properties
physical_IB_relation op
is inverse of
is mutated gene in op

has_not_functionop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/not_function

has characteristics: asymmetric

has super-properties
not_annotated_with op
is inverse of
is not function of op

has_nucleotide_featureop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_nuclFeature

[description] NucleotideSequence->NucleotideFeature

has characteristics: asymmetric, transitive

has super-properties
has_feature op
is inverse of
is nucleotide feature of op

has_observed_phenotypeop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_observ_pheno

[description] Result of a experiment produces a phenotype
has super-properties
has_attributive_relation_with op

has_partop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_part

[description] Specifies the inverse relation to part_of

has characteristics: transitive

has super-properties
has_physical_relation_with op
has_physical_relation_with op
is inverse of
part_of op

has_participantop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_participant

[description] P has_participant C if and only if: given any process p that instantiates P there is some continuant c, and some time t, such that: c instantiates C at t and c participates in p at t

has characteristics: asymmetric

has super-properties
concepts relation op
has sub-properties
cofactored_by op, has_agent op
is inverse of
participates_in op

has_physical_relation_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/physical

has equivalent properties
has_physical_relation_with op
has super-properties
concepts relation op
has sub-properties
chemical_relationship op, contributes_to op, derives_from op, has_part op, has_relative_position op, indirect_effect op, instance_of op, is_a op, is_equivalent_to op, is_equivalent_to op, mathematical_relationship op, part_of op, physical_IB_relation op, preceded_by op, replaced_by op, situated_to op, state_change_from op, textual_relationship op, transformation_of op

has_physical_relation_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/physical_relation

has equivalent properties
has_physical_relation_with op
has super-properties
concepts relation op
has sub-properties
chemical_relationship op, contributes_to op, derives_from op, has_part op, has_relative_position op, indirect_effect op, instance_of op, is_a op, is_equivalent_to op, mathematical_relationship op, part_of op, physical_IB_relation op, preceded_by op, replaced_by op, situated_to op, state_change_from op, textual_relationship op, transformation_of op

has_protein_domainop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_domain

[description] AminoacidSequence->ProteinDomain

has characteristics: asymmetric, transitive

has super-properties
has_feature op
is inverse of
is protein domain of op

has_pwmop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/h_pwm

[description] transcription factor binding site (TFBS) has position-specific weight matrix (PWM)
has super-properties
has_attributive_relation_with op
is inverse of
is pwm of op

has_relative_positionop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_relative_position

has characteristics: symmetric, transitive, reflexive

has super-properties
has_physical_relation_with op
has_physical_relation_with op
has sub-properties
adjacent_to op, colocalized_with op, located_in op, share_intermediate op
is inverse of
has_relative_position op, has_relative_position op

has_relative_sequence_positionop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/rel_seq_pos

has characteristics: symmetric, transitive, reflexive

has super-properties
physical_IB_relation op
has sub-properties
is_5'_neighbour_of op, is_subfeature_of op
is inverse of
has relative sequence position op

has_sequenceop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_sequence

[description] InfoPolymer->Sequence

has characteristics: asymmetric

has super-properties
has_attributive_relation_with op
is inverse of
is sequence of op

has_similar_sequenceop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/h_s_s

[description] blastbased homolog proteins of different species
has equivalent properties
has_similar_sequence op
has super-properties
physical_IB_relation op
has sub-properties
homologue op
is inverse of
has_similar_sequence op

has_similar_sequenceop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/has_similar_sequence

[description] blastbased homolog proteins of different species
has equivalent properties
has_similar_sequence op
has super-properties
physical_IB_relation op
has sub-properties
homologue op
is inverse of
has_similar_sequence op, has_similar_sequence op, has_similar_sequence op

hasConceptop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/hasConcept

[description] A MeSH description has a concept
has super-properties
concepts relation op

hasPreferredConceptop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/hasPreferredConcept

[description] A MeSH descriptor has a preferred concept
has super-properties
concepts relation op

homologueop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/homologue

[description] gene is homologue to other gene
has super-properties
has_similar_sequence op
has_similar_sequence op
has sub-properties
orthologue op, paralogue op

hormone treatment (control case)op back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/hormone_control

[description] hormone_control relates an experiment with a hormone. experiment -> hormone_control -> hormone should be interpreted as: This experiment has no hormone treatment applied.
has super-properties
involves hormone op

hormone treatment (treated case)op back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/hormone_treated

[description] hormone_treated relates an experiment with a hormone. experiment -> hormone_treated -> hormone should be interpreted as: This experiment involves the application of hormone.
has super-properties
involves hormone op

indirect_effectop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/id_by

[description] indirect effect without molecular details (same as used for GErel)
has super-properties
has_physical_relation_with op
has_physical_relation_with op

inflicts_growth_defect_onop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_sgd

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
growth defect inflicted by op

inflicts_haploinsufficiency_onop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_shi

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
haploinsufficiency inflicted by op

information_transductionop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/info_transd

has super-properties
physical_IB_relation op
has sub-properties
encodes op, encodes op, is_encoded_by op, transcribes_to op, translates_to op

inhibited_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/in_by

[description] inhibition of a gene's expression by a transcription factor

has characteristics: asymmetric

has equivalent properties
inhibited_by op
has super-properties
regulated_by op
regulated_by op
is inverse of
inhibits op

inhibited_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/inhibited_by

[description] inhibition of a gene's expression by a transcription factor

has characteristics: asymmetric

has equivalent properties
inhibited_by op
has super-properties
regulated_by op
is inverse of
inhibits op

inhibitsop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/inhibits

has super-properties
concepts relation op
is inverse of
inhibited_by op, inhibited_by op

inparalogueop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/inparalogue

has super-properties
concepts relation op
is inverse of
inparalogue op

inparalogueop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ipara

[description] gene is inparalogue of another gene
has super-properties
paralogue op
is inverse of
inparalogue op

instance_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/instance_of

[description] A relation between an instance and a class. For components: a primitive relation between a component instance and a class which it instantiates at a specific time. For processes: a primitive relation, between a process instance and a class which it instantiates, holding independently of time

has characteristics: asymmetric

has super-properties
has_physical_relation_with op
has_physical_relation_with op
is inverse of
has instance op

integral_part_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/integral_part_of

[description] C integral_part_of C' if and only if: C part_of C' AND C' has_part C
has super-properties
part_of op
is inverse of
has integral part op

interacts genetically withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/interacts_genetically_with

has super-properties
concepts relation op
is inverse of
interacts_genetically_with op

interacts physically withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/interacts_physically_with

has super-properties
concepts relation op
is inverse of
interacts_physically_with op

interacts_genetically_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi

[description] Gene->Gene
has super-properties
interacts_with op
has sub-properties
causes_lethality_with op, dosage_growth_defect op, dosage_lethality op, dosage_rescue op, enhances_phenotype_of op, expressed_during op, expressed_in op, inflicts_growth_defect_on op, inflicts_haploinsufficiency_on op, rescues op, suppresses_phenotype_of op
is inverse of
interacts genetically with op

interacts_physically_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/phys_int

[description] Participant->Participant
has super-properties
interacts_with op
has sub-properties
binds_to op, enz_int op
is inverse of
interacts physically with op

interacts_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/it_wi

[description] Thing->Thing

has characteristics: symmetric

has super-properties
physical_IB_relation op
has sub-properties
interacts_genetically_with op, interacts_physically_with op
is inverse of
missing_interaction op

intermediate_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/im_of

has characteristics: asymmetric

has super-properties
chemical_relationship op
is inverse of
has intermediate op

inverse sensuop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/inverse_sensu

has super-properties
concepts relation op
is inverse of
sensu op

inverse_correlation_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/inverse_correlation_with

[description] Entities that are inversely correlated (-ve coefficiant)
has super-properties
correlated_with op

involvesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/involves

has super-properties
concepts relation op
is inverse of
is_involved_in op

involves hormoneop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/hormone_treatment

has super-properties
concepts relation op

involves hormoneop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/with_treatment

has super-properties
concepts relation op
has sub-properties
hormone treatment (control case) op, hormone treatment (treated case) op, is associated with hormone op

is 3' adjacent toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_3'_adjacent_to

has super-properties
concepts relation op
is inverse of
is_5'_adjacent_to op

is 3' neighbour ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_3'_neighbour_of

has super-properties
concepts relation op
is inverse of
is_5'_neighbour_of op

is agent ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_agent_of

has super-properties
concepts relation op
is inverse of
has_agent op

is associated with hormoneop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/assoc_hormone

[description] This would typically relate a gene or an experiment with a hormone. Interpretation should be: This gene or experiment involved this hormone (but more explicit information of how is not known).
has super-properties
involves hormone op

is catalyzed byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_catalyzed_by

has super-properties
concepts relation op
is inverse of
catalyzes op

is chemical functional parent ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_chemical_functional_parent_of

has super-properties
concepts relation op
is inverse of
has_chemical_functional_parent op

is chemical inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_chemical_in

has super-properties
concepts relation op
is inverse of
has_chemical op

is chemical parent hybrideop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_chemical_parent_hybride

has super-properties
concepts relation op
is inverse of
has_chemical_parent_hybride op

is downstream fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_downstream_from

has super-properties
concepts relation op
is inverse of
is_upstream_of op

is efflux fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_efflux_from

has super-properties
concepts relation op
is inverse of
effluxes_from op

is elongated byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_elongated_by

has super-properties
concepts relation op
is inverse of
elongates op

is encoded byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_encoded_by

has super-properties
concepts relation op
is inverse of
encodes op, encodes op

is feature ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_feature_of

has super-properties
concepts relation op
is inverse of
has_feature op

is function ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_function_of

has super-properties
concepts relation op
is inverse of
has_function op

is location ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_location_of

has super-properties
concepts relation op
is inverse of
located_in op

is modified byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_modified_by

has super-properties
concepts relation op
is inverse of
modifies op

is mutated gene inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_mutated_gene_in

has super-properties
concepts relation op
is inverse of
has_mutated_gene op

is not function ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_not_function_of

has super-properties
concepts relation op
is inverse of
has_not_function op

is not location ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_not_location_of

has super-properties
concepts relation op
is inverse of
is_not_located_in op

is nucleotide feature ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_nucleotide_feature_of

has super-properties
concepts relation op
is inverse of
has_nucleotide_feature op

is protein domain ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_protein_domain_of

has super-properties
concepts relation op
is inverse of
has_protein_domain op

is pwm ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_pwm_of

has super-properties
concepts relation op
is inverse of
has_pwm op

is sequence ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_sequence_of

has super-properties
concepts relation op
is inverse of
has_sequence op

is transcribed fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_transcribed_from

has super-properties
concepts relation op
is inverse of
transcribes_to op

is translated fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_translated_from

has super-properties
concepts relation op
is inverse of
translates_to op

is_5'_adjacent_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/5pAdjacent

has characteristics: asymmetric

has super-properties
is_upstream_of op
is inverse of
is 3' adjacent to op

is_5'_neighbour_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/5pNeighbour

has characteristics: asymmetric

has super-properties
has_relative_sequence_position op
has sub-properties
is_upstream_of op, overlaps_5'_of op
is inverse of
is 3' neighbour of op

is_aop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_a

[description] (Meta) is_a This relation type represents when two classes are represented as Ondex Concepts, that there is a class level is-a relationship between the two classes.

has characteristics: transitive, reflexive

has super-properties
has_physical_relation_with op
has_physical_relation_with op
is inverse of
is_a op, is_a op

is_annotated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_annotated_by

[description] Thing->Annotation
has super-properties
has_attributive_relation_with op
is inverse of
annotates op

is_chemical_substituent_group_fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_chem_sub_gr_from

[description] Indicates the relationship between a substituent group (or atom) and its parent molecular entity, from which it is formed by loss of one or more protons or simple groups.

has characteristics: asymmetric

has super-properties
chemical_relationship op
is inverse of
has chemical substituent group op

is_conjugateop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_conjugate

[description] Cyclic relationships which are used mainly between acids and their conjugate bases.

has characteristics: symmetric

has super-properties
chemical_relationship op
is inverse of
is_conjugate op, is_conjugate op

is_enantiomer_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_enantiomer_of

[description] A cyclic relationship used when two entities are enantiomers of each other. An entity may have this relationship with only one other entity.
has super-properties
chemical_relationship op

is_encoded_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/en_by

[description] Polypeptide->Gene

has characteristics: asymmetric

has super-properties
information_transduction op
is inverse of
encodes op, encodes op

is_equivalent_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/equ

has characteristics: symmetric, transitive, reflexive

has equivalent properties
is_equivalent_to op
has super-properties
has_physical_relation_with op
has_physical_relation_with op

is_equivalent_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/equivalent

has characteristics: symmetric, transitive, reflexive

has equivalent properties
is_equivalent_to op
has super-properties
has_physical_relation_with op

is_hypernym_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_hyperym_of

has super-properties
textual_relationship op

is_involved_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/inv_in

[description] Involvement in something e.g. disease

has characteristics: asymmetric

has super-properties
physical_IB_relation op
is inverse of
involves op

is_not_located_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/not_located_in

has characteristics: asymmetric

has super-properties
not_annotated_with op
is inverse of
is not location of op

is_part_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_part_of

[description] Molecule->MoleculeCmplx

has characteristics: transitive

has super-properties
part_of op

is_subfeature_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/subfeature_of

has super-properties
has_relative_sequence_position op
is inverse of
has subfeature op

is_tautomer_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/is_tautomer_of

[description] A cyclic relationship used to show the interrelationship between two tautomers, where the differences between the structures are significant enough to warrant their separate inclusion in ChEBI.
has super-properties
chemical_relationship op

is_upstream_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/upstream

has characteristics: transitive

has super-properties
is_5'_neighbour_of op
has sub-properties
is_5'_adjacent_to op
is inverse of
is downstream from op

KIop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/KI

has super-properties
concepts relation op

lethality caused with byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/lethality_caused_with_by

has super-properties
concepts relation op
is inverse of
causes_lethality_with op

located_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/located_in

[description] Localizable->Space

has characteristics: asymmetric, transitive

has super-properties
has_relative_position op
is inverse of
is location of op

mathematical_relationshipop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/math

[description] superclass for mathematical relations
has super-properties
has_physical_relation_with op
has_physical_relation_with op
has sub-properties
correlated_with op

member_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/member_of

[description] Used for characterisation of grouping relationships, e.g. a reaction is member of a pathway.

has characteristics: asymmetric, transitive, reflexive

has super-properties
has_attributive_relation_with op
is inverse of
has member op

methylated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/methylated_by

has super-properties
post-translationally_modified_by op
is inverse of
methylates op

methylatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/methylates

has super-properties
concepts relation op
is inverse of
methylated_by op

missing_interactionop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/it_mi

[description] Thing->Thing

has characteristics: symmetric

has super-properties
concepts relation op
is inverse of
interacts_with op

modifiesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/modifies

[description] Participant->Process

has characteristics: asymmetric

has super-properties
participates_actively_in op
has sub-properties
catalyzes op, performs_transport op
is inverse of
is modified by op

narrower thanop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/narrower

[description] one term is narrower than another (SKOS?)
has super-properties
concepts relation op

negatively_regulatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/neg_reg

[description] Used in GO, eg BP A neg_regulates BP B
has super-properties
regulated_by op
regulated_by op

not_annotated_withop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/not_annotated_by

has characteristics: asymmetric

has super-properties
has_attributive_relation_with op
has sub-properties
has_not_function op, is_not_located_in op, participates_not op
is inverse of
does not annotate op

occurs_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/occ_in

has equivalent properties
occurs_in op
has super-properties
concepts relation op
is inverse of
has occurrence of op

occurs_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/occurs_in

has equivalent properties
occurs_in op
has super-properties
concepts relation op
is inverse of
has occurrence of op

orthologueop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ortho

[description] blastbased ortholog proteins of different species

has characteristics: symmetric

has super-properties
homologue op

overlaps 3' ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/overlaps_3'_of

has super-properties
concepts relation op
is inverse of
overlaps_5'_of op

overlaps_5'_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/5pOverlap

has characteristics: asymmetric

has super-properties
is_5'_neighbour_of op
is inverse of
overlaps 3' of op

paralogueop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/para

[description] gene is paralogue to other gene

has characteristics: symmetric

has super-properties
homologue op
has sub-properties
inparalogue op

part_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/part_of

[description] For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)

has characteristics: transitive

has super-properties
has_physical_relation_with op
has_physical_relation_with op
has sub-properties
integral_part_of op, is_part_of op, part_of_catalyzing_class op, part_of_catalyzing_class op, proper_part_of op
is inverse of
has_part op

part_of_catalyzing_classop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/cat_c

has equivalent properties
part_of_catalyzing_class op
has super-properties
part_of op

part_of_catalyzing_classop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/catalyzing_class

has equivalent properties
part_of_catalyzing_class op
has super-properties
part_of op

participates_actively_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/part_act

has characteristics: asymmetric

has super-properties
participates_in op
has sub-properties
modifies op
is inverse of
has active participant op

participates_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/participates_in

[description] Participant->Process

has characteristics: asymmetric

has super-properties
physical_IB_relation op
has sub-properties
participates_actively_in op, participates_passively_in op
is inverse of
has_participant op

participates_notop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/participates_not

has characteristics: asymmetric

has super-properties
not_annotated_with op
is inverse of
has not participant op

participates_passively_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/part_pass

has characteristics: asymmetric

has super-properties
participates_in op
is inverse of
has passive participant op

performs_transportop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/performs_transport

[description] Transporter->Transport

has characteristics: asymmetric

has super-properties
modifies op
is inverse of
transport performed by op

phenotype enhanced byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/phenotype_enhanced_by

has super-properties
concepts relation op
is inverse of
enhances_phenotype_of op

phenotype suppressed byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/phenotype_suppressed_by

has super-properties
concepts relation op
is inverse of
suppresses_phenotype_of op

phosphorylated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/phosphorylated_by

[description] Protein->Protein
has super-properties
post-translationally_modified_by op
is inverse of
phosphorylates op

phosphorylatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/phosphorylates

has super-properties
concepts relation op
is inverse of
phosphorylated_by op

physical i b relationop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/physical_IB_relation

has super-properties
concepts relation op
is inverse of
physical_IB_relation op

physical_IB_relationop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/phys_intbio

has characteristics: symmetric

has super-properties
has_physical_relation_with op
has_physical_relation_with op
has sub-properties
elongates op, has_chemical op, has_mutated_gene op, has_relative_sequence_position op, has_similar_sequence op, has_similar_sequence op, information_transduction op, interacts_with op, is_involved_in op, participates_in op, post-translationally_modified_by op, published_in op, published_in op, regulated_by op, regulated_by op, regulates op, sensu op
is inverse of
physical i b relation op

positively_regulatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/pos_reg

[description] Used in GO, eg BP A pos_regulates BP B
has super-properties
regulated_by op
regulated_by op

post translationally modifiesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/post-translationally_modifies

has super-properties
concepts relation op
is inverse of
post-translationally_modified_by op

post-translationally_modified_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ptm_by

has super-properties
physical_IB_relation op
has sub-properties
acetylated_by op, demethylated_by op, dephosphorylated_by op, glycosylated_by op, methylated_by op, phosphorylated_by op, ubiquinated_by op
is inverse of
post translationally modifies op

preceded_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/pr_by

[description] A is the direct outcome of B

has characteristics: asymmetric, transitive

has super-properties
preceded_by op
is inverse of
precedes op

preceded_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/preceded_by

[description] Used for keggenzymecentric on P preceded_by P' if and only if: given any process p that instantiates P at a time t, there is some process p' such that p' instantiates P' at time t', and t' is earlier than t.

has characteristics: asymmetric, transitive

has super-properties
has_physical_relation_with op
has_physical_relation_with op
has sub-properties
preceded_by op
is inverse of
precedes op

precedesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/precedes

has super-properties
concepts relation op
is inverse of
preceded_by op, preceded_by op

produced_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/pd_by

has characteristics: asymmetric

has equivalent properties
produced_by op
has super-properties
given_by op
is inverse of
produces op

produced_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/produced_by

has characteristics: asymmetric

has equivalent properties
produced_by op
has super-properties
given_by op
is inverse of
produces op

producesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/produces

has characteristics: asymmetric

has super-properties
gives op
is inverse of
produced_by op, produced_by op

proper_part_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/proper_part_of

[description] As for part_of, with the additional constraint that subject and object are distinct

has characteristics: asymmetric, transitive

has super-properties
part_of op
is inverse of
has proper part op

publication featuresop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/publication_features

has super-properties
concepts relation op
is inverse of
published_in op, published_in op

published_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/pub_in

[description] Thing->Publication
has equivalent properties
published_in op
has super-properties
physical_IB_relation op
is inverse of
publication features op

published_inop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/published_in

[description] Thing->Publication
has equivalent properties
published_in op
has super-properties
physical_IB_relation op
is inverse of
publication features op

qualifiedByop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/qualifiedBy

[description] A MeSH description is qualified by a MeSH qualifier
has super-properties
concepts relation op

regulated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/regulated_by

[description] TF->Gene

has characteristics: asymmetric

has equivalent properties
regulated_by op
has super-properties
physical_IB_relation op
has sub-properties
activated_by op, expressed_by op, inhibited_by op, negatively_regulates op, positively_regulates op, repressed_by op
is inverse of
regulates op

regulated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/rg_by

[description] TF->Gene

has characteristics: asymmetric

has equivalent properties
regulated_by op
has super-properties
physical_IB_relation op
has sub-properties
activated_by op, activated_by op, expressed_by op, expressed_by op, inhibited_by op, inhibited_by op, negatively_regulates op, positively_regulates op, repressed_by op, repressed_by op
is inverse of
regulates op

regulatesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/regulates

[description] Gene->TF or GO1->GO2

has characteristics: asymmetric

has super-properties
physical_IB_relation op
is inverse of
regulated_by op, regulated_by op

related toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/related

[description] one term is related to another (SKOS?)
has super-properties
concepts relation op

replaced_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/rp_by

has super-properties
has_physical_relation_with op
has_physical_relation_with op
is inverse of
replaces op

replacesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/replaces

has super-properties
concepts relation op
is inverse of
replaced_by op

repressed_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/re_by

[description] gene's expression is repressed by transcripiton factor
has equivalent properties
repressed_by op
has super-properties
regulated_by op
regulated_by op

repressed_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/repressed_by

[description] gene's expression is repressed by transcripiton factor
has equivalent properties
repressed_by op
has super-properties
regulated_by op

rescued byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/rescued_by

has super-properties
concepts relation op
is inverse of
rescues op

rescuesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_sr

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
rescued by op

s_ispop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/s_isp

has super-properties
concepts relation op

sensuop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/sensu

[description] GO concept names contain a sensu part which we break up into seperate concepts and relations
has super-properties
physical_IB_relation op
is inverse of
inverse sensu op

share_intermediateop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/sh_im

[description] shared with two successive reactions (ECrel) or intermediate of two interacting proteins (PPrel)
has super-properties
has_relative_position op

simop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/sim

has super-properties
concepts relation op

situated_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/situated_to

[description] A transcription factor binding site is situated next to a Gene.

has characteristics: symmetric, transitive

has super-properties
has_physical_relation_with op
has_physical_relation_with op
is inverse of
situated_to op, situated_to op

state change toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/state_change_to

has super-properties
concepts relation op
is inverse of
state_change_from op

state_change_fromop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/st_fr

[description] entry2 has a state change from entry1

has characteristics: asymmetric

has super-properties
has_physical_relation_with op
has_physical_relation_with op
is inverse of
state change to op

suppresses_phenotype_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/gi_ps

has characteristics: asymmetric

has super-properties
interacts_genetically_with op
is inverse of
phenotype suppressed by op

taken_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/taken_by

has characteristics: asymmetric

has super-properties
concepts relation op
has sub-properties
consumed_by op, consumed_by op, taken_up_by op, taken_up_by op
is inverse of
takes op

taken_up_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/pu_by

has characteristics: asymmetric

has equivalent properties
taken_up_by op
has super-properties
taken_by op
is inverse of
takes up op

taken_up_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/taken_up_by

has characteristics: asymmetric

has equivalent properties
taken_up_by op
has super-properties
taken_by op
is inverse of
takes up op

takesop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/takes

has super-properties
concepts relation op
is inverse of
taken_by op

takes upop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/takes_up

has super-properties
concepts relation op
is inverse of
taken_up_by op, taken_up_by op

textual_relationshipop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/textual_relationship

has super-properties
has_physical_relation_with op
has_physical_relation_with op
has sub-properties
is_hypernym_of op

transcribes_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/transcribes_to

[description] Gene->mRNA

has characteristics: asymmetric

has super-properties
information_transduction op
is inverse of
is transcribed from op

transformation_ofop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/transformation_of

[description] Relation between two classes, in which instances retain their identity yet change their classification by virtue of some kind of transformation. Formally: C transformation_of C' if and only if given any c and any t, if c instantiates C at time t, then for some t', c instantiates C' at t' and t' earlier t, and there is no t2 such that c instantiates C at t2 and c instantiates C' at t2.
has super-properties
has_physical_relation_with op
has_physical_relation_with op

translates_toop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/translates_to

[description] mRNA->Polypeptide

has characteristics: asymmetric

has super-properties
information_transduction op
is inverse of
is translated from op

transport performed byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/transport_performed_by

has super-properties
concepts relation op
is inverse of
performs_transport op

ubiquinated_byop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/ubiquinated_by

has super-properties
post-translationally_modified_by op

unkwnop back to ToC or Object Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/unkwn

has super-properties
concepts relation op

Data Properties

2Syn-mapping_scoredp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/2SYS

has range
string
is also defined as
annotation property

2SYNHITSdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/2SYNHITS

has range
long
is also defined as
annotation property

Abstractdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/Abstract

has range
string
is also defined as
annotation property

ACCHITSdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/ACCHITS

has range
long
is also defined as
annotation property

Affymatrix chipsetdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/AFFYCHIPSET

has range
string
is also defined as
annotation property

AminoacidSequencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/AA

has range
string
is also defined as
annotation property

Authorsdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/AUTHORS

has range
string
is also defined as
annotation property

BindingEvidencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/BEV

has range
string
is also defined as
annotation property

BindingMotifdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/BM

has range
string
is also defined as
annotation property

Bit Scoredp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/BITSCORE

has range
double
is also defined as
annotation property

BLAST E-Valuedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/BLEV

has range
double
is also defined as
annotation property

Chemicaldp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/Chemical

has range
string
is also defined as
annotation property

Chromosomedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/Chromosome

has range
string
is also defined as
annotation property

Citation Numberdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/CitNum

has range
long
is also defined as
annotation property

CML_Chemical_Structuredp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/CML

has range
string
is also defined as
annotation property

confidencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/CONF

has range
double
is also defined as
annotation property

Cooccurrence - #Publicationsdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/CoCitNum

has range
long
is also defined as
annotation property

Cooccurrence - #Sentencesdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/CoSenNum

has range
long
is also defined as
annotation property

Coveragedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/COVERAGE

has range
double
is also defined as
annotation property

descriptiondp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/description

has range
string
is also defined as
annotation property

DNA_sequencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/DNAS

has range
string
is also defined as
annotation property

DOIdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/DOI

has range
string
is also defined as
annotation property

dominancedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/dominance

has range
string
is also defined as
annotation property

ecotypedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/ecotype

has range
string
is also defined as
annotation property

End of featuredp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/END

has range
long
is also defined as
annotation property

Full Textdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/FullText

has range
string
is also defined as
annotation property

gene_roledp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/gene_role

has range
string
is also defined as
annotation property

GibbsFreeEnergydp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/DELTAGO

has range
double
is also defined as
annotation property

GO match scoredp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/GOMATCHSCORE

has range
double
is also defined as
annotation property

GOAdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/GOA

has range
string
is also defined as
annotation property

ImageLinkdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/IMAGE

has range
string
is also defined as
annotation property

Inner product of TFIDFdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/IP_TFIDF

has range
double
is also defined as
annotation property

IntronStructuredp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/IntronStructure

has range
string
is also defined as
annotation property

Journal reference for a publicationdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/JOURNAL_REF

has range
string
is also defined as
annotation property

K_catdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/KKAT

has range
double
is also defined as
annotation property

KI-valuedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/KI

has range
double
is also defined as
annotation property

KM-valuedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/KM

has range
double
is also defined as
annotation property

log Likelihooddp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/LOGL

has range
double
is also defined as
annotation property

Maximum of TFIDFdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/MAX_TFIDF

has range
double
is also defined as
annotation property

Medical Subject Headingsdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/MeSH

has range
string
is also defined as
annotation property

MetabolicClassdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/CLASS

has range
string
is also defined as
annotation property

microarraydp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/microarray

has range
string
is also defined as
annotation property

molecular mass/molecular weightdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/Mr

has range
double
is also defined as
annotation property

mutagenesis_typedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/mutagenesis_type

has range
string
is also defined as
annotation property

mutatedSitedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/mutatedSite

has range
string
is also defined as
annotation property

Mutual informationdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/MUTUAL_INF

has range
double
is also defined as
annotation property

Network Workbench weightdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/NWBWeight

has range
double
is also defined as
annotation property

Nucleic_acid_sequencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/NA

has range
string
is also defined as
annotation property

p-valuedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PVALUE

has range
double
is also defined as
annotation property

Percent Sequence Identitydp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PSI

has range
double
is also defined as
annotation property

Pfam mapping hitsdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PFAMHITS

has range
long
is also defined as
annotation property

pH_optimumdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PHOPT

has range
double
is also defined as
annotation property

Phenotypedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/Phenotype

has range
string
is also defined as
annotation property

PlantTypedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PlantType

has range
string
is also defined as
annotation property

PMIDdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PMID

has range
string
is also defined as
annotation property

position_tagdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/pos_tag

has range
string
is also defined as
annotation property

Protein Structuredp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/STRUCTURE

has range
string
is also defined as
annotation property

Provisional annotationdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PROANNO

has range
string
is also defined as
annotation property

PTMdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PTM

has range
string
is also defined as
annotation property

PWMdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PWM

has range
string
is also defined as
annotation property

Referencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/REF

has range
string
is also defined as
annotation property

RegulatorTypedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/RT

has range
string
is also defined as
annotation property

RNA-Sequencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/RNAS

has range
string
is also defined as
annotation property

SBO termdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/SBO

has range
string
is also defined as
annotation property

Scaffolddp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/Scaffold

has range
long
is also defined as
annotation property

Start of featuredp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/BEGIN

has range
long
is also defined as
annotation property

Stranddp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/STR

has range
string
is also defined as
annotation property

StructAlign Confidencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/SXCONF

has range
long
is also defined as
annotation property

Subunitsdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/SUBUS

has range
string
is also defined as
annotation property

Taxonomy Rankdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/RANK

has range
string
is also defined as
annotation property

Taxonomy_IDdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/TAXID

has range
string
is also defined as
annotation property

Temperature_Rangedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/TRAN

has range
double
is also defined as
annotation property

Textdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/Text

has range
string
is also defined as
annotation property

TFBS-Sequencedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/TFBSS

has range
string
is also defined as
annotation property

TFIDFdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/TFIDF

has range
double
is also defined as
annotation property

TFMdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/TFM

has range
string
is also defined as
annotation property

theta valuedp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/THETA

has range
double
is also defined as
annotation property

Titledp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/AbstractHeader

has range
string
is also defined as
annotation property

Type of Publicationdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/PUB_TYPE

has range
string
is also defined as
annotation property

URLdp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/URL

has range
string
is also defined as
annotation property

Year publisheddp back to ToC or Data Property ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/attributes/YEAR

has range
long
is also defined as
annotation property

Named Individuals

3DMETni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/3DMET

[description] A three-dimensional-structure database of natural metabolites 3DMET is a database collecting three-dimensional structures of natural metabolites - http://www.3dmet.dna.affrc.go.jp/
belongs to
data source c

A type of phylogenetic evidence whereby an aspect ofni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IBD

[description] A type of phylogenetic evidence whereby an aspect of an ancestral gene is inferred through the characterization of an aspect of a descendant gene.
belongs to
evidence type c

Accession based mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/ACC

[description] accession based mapping
belongs to
evidence type c

AfCSni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/AFCS

[description] Alliance for Cellular Signaling - http://www.afcs.org/
belongs to
data source c

Affymetrixni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/AFFYMETRIX

[description] A pioneer in genetic analysis, Affymetrix introduced highly parallel genetic assays to the marketplace by commercializing the first DNA microarray in the late 1980s. - http://www.affymetrix.com
belongs to
data source c

Arabidopsis Hormone Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/AHD

[description] Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis - Peng et al., Nucleic Acids Research 2009 37(Database issue):D975-D982; doi:10.1093/nar/gkn873
belongs to
data source c

AraCycni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/AC

[description] AraCyc is a metabolic pathway database for Arabidopsis thaliana that contains information about both predicted and experimentally determined pathways, reactions, compounds, genes and enzymes. - http://www.arabidopsis.org/biocyc/
belongs to
data source c

AtRegNetni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/ATREGNET

[description] AtRegNet is a tool used to display the regulatory networks of Arabidopsis thaliana transcription factors. - http://arabidopsis.med.ohio-state.edu/moreNetwork.html
belongs to
data source c

BIOBASE Knowledge Libraryni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/BKL

[description] With content covering disease, drugs, gene regulation, pathways, and fully annotated genomes. - http://www.biobase-international.com/index.php?id=databasesandtools
belongs to
data source c

BIOBASE PathoDBni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PATHODB

[description] PathoDB is a database on pathologically relevant mutated forms of transcription factors and their binding sites. - http://www.biobase-international.com/index.php?id=pathodb
belongs to
data source c

BioGRIDni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/BIOGRID

[description] General Repository for Interaction Datasets - http://thebiogrid.org
belongs to
data source c

BLAST based mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/BLAST

[description] BLAST based mapping
belongs to
evidence type c

Broad Instituteni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/BROAD

[description] Broad Institute of MIT and Harvard - http://www.broad.mit.edu
belongs to
data source c

By evidence from Gene Ontology annotationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/GOA

[description] By evidence from Gene Ontology annotation
belongs to
evidence type c

By genetic evidence (mutant or transgenic study)ni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/GI

[description] By genetic evidence (mutant or transgenic study)
belongs to
evidence type c

CAMJEni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CAMJE

[description] Campylobacter jejuni proteome - http://www.expasy.ch/sprot/hamap/CAMJE.html
belongs to
data source c

Carbohydrate-Active enZymesni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CAZY

[description] The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds. - http://www.cazy.org/
belongs to
data source c

Catalogue of Gene Symbols for Wheatni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CGSW

[description] A Catalogue as distributed on the MacGene CD at the 10th International Wheat Genetics Symposium. - http://wheat.pw.usda.gov/ggpages/wgc/2003/
belongs to
data source c

Cell Ontologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CL

[description] The Cell Ontology is designed as a structured controlled vocabulary for cell types. - http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell
belongs to
data source c

ChEMBLdbni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CHEMBL

[description] ChEMBL is a database of bioactive drug-like small molecules, it contains 2-D structures, calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) and abstracted bioactivities (e.g. binding constants, pharmacology and ADMET data). - https://www.ebi.ac.uk/chembldb/
belongs to
data source c

Chemical Abstracts Serviceni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CAS

[description] CAS offers the CAS REGISTRYSM - the largest collection of substance information - as well as indexed references from more than 10,000 major scientific journals and 59 patent authorities around the world. - http://www.cas.org/
belongs to
data source c

Chemical Entities of Biological Interestni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CHEBI

[description] Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on small chemical compounds. - http://www.ebi.ac.uk/chebi/
belongs to
data source c

Clusters of Orthologous Groups of proteinsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/COG

[description] Clusters of Orthologous Groups of proteins (COGs) were delineated by comparing protein sequences encoded in complete genomes, representing major phylogenetic lineages. Each COG consists of individual proteins or groups of paralogs from at least 3 lineages and thus corresponds to an ancient conserved domain. - http://www.ncbi.nlm.nih.gov/COG/
belongs to
data source c

Complex Carbohydrate Research Centerni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CSD

[description] The Complex Carbohydrate Research Center (CCRC) was founded at the University of Georgia (UGA) in September 1985 to answer the national need for a center devoted to increasing knowledge of the structures and functions of complex carbohydrates. - http://www.ccrc.uga.edu/
belongs to
data source c

Complex Carbohydrate Structure Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CCSD

[description] The Complex Carbohydrate Structure Database (CCSD) and CarbBank, an IBM PC/AT (or compatible) database management system, were created to provide an information system to meet the needs of people interested in carbohydrate science. - http://www.boc.chem.uu.nl/sugabase/carbbank.html
belongs to
data source c

Corpusni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/Corpus

[description] Set of publications to be analysed
belongs to
data source c

Cyanobacteria Gene Annotation Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/CYORF

[description] CYORF is a vehicle by which the community of cyanobacteriologists collectively annotates available genomes from cyanobacteria. - http://cyano.genome.jp/
belongs to
data source c

Database of Comparative Protein Structure Modelsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MODBASE

[description] MODBASE is a queryable database of annotated protein structure models. - http://modbase.compbio.ucsf.edu
belongs to
data source c

dbESTni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/dbEST

[description] dbEST (Nature Genetics 4:332-3;1993) is a division of GenBank that contains sequence data and other information on "single-pass" cDNA sequences, or Expressed Sequence Tags, from a number of organisms. - http://www.ncbi.nlm.nih.gov/dbEST/
belongs to
data source c

DDBJ/EMBL-bank/GenBank databasesni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PROID

[description] The protein identifier shared by DDBJ/EMBL-bank/GenBank nucleotide (e.g. CAA71991)
belongs to
data source c

Digital Object Identifierni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/DOI

[description] The Digital Object Identifier (DOI) System is for identifying content objects in the digital environment. - http://www.doi.org/
belongs to
data source c

Drastic Insight Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/DRA

[description] Drastic: A Database Resource for the Analysis of Signal Transduction In Cells - http://www.drastic.org.uk
belongs to
data source c

DrugBankni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/DRUGBANK

[description] The DrugBank database is a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. - http://www.drugbank.ca/
belongs to
data source c

EC 2 GO importni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IMPEG

[description] EC 2 GO import
belongs to
evidence type c

EC2GO file based mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/EC2GO

[description] ec2go file based mapping
belongs to
evidence type c

EcoCycni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/ECOCYC

[description] Database that describes the genome and the biochemical machinery of E. coli, maintained by SRI International, Menlo Park, CA. - http://www.ecocyc.org
belongs to
data source c

EMBL-EBI International Nucleotide Sequence Datani back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/EMBL

[description] The EMBL Nucleotide Sequence Database (also known as EMBL-Bank) constitutes Europe's primary nucleotide sequence resource. - http://www.ebi.ac.uk/embl/
belongs to
data source c

EMBL-EBI International Nucleotide Sequence Data Clonesni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/EMBLC

[description] The EMBL Nucleotide Sequence Database (also known as EMBL-Bank) constitutes Europe's primary nucleotide sequence resource. - http://www.ebi.ac.uk/embl/
belongs to
data source c

ENCyclopedia Of DNA Elementsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/ENCODE

[description] The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. - http://www.genome.gov/10005107
belongs to
data source c

Ensembl projectni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/ENSEMBL

[description] The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. - http://www.ensembl.org
belongs to
data source c

Environment Ontologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/EO

[description] A set of standardized controlled vocabularies to describe various types of treatments given to a individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies. - http://www.gramene.org/plant_ontology/ontology_browse.html
belongs to
data source c

Enzyme Database - BRENDAni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/BRENDA

[description] The Comprehensive Enzyme Information System - http://www.brenda-enzymes.org/
belongs to
data source c

Enzyme Nomenclatureni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/EC

[description] SwissProt Enzyme nomenclature database ENZYME is a repository of information relative to the nomenclature of enzymes. It is primarily based on the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB) and it describes each type of characterized enzyme for which an EC (Enzyme Commission) number has been provided. - http://www.expasy.ch/enzyme/
belongs to
data source c

Eukaryotic Promoter Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/EPD

[description] The Eukaryotic Promoter Database is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. - http://www.epd.isb-sib.ch
belongs to
data source c

ExPASy Proteomics Serverni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PROSITE

[description] PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them. - http://www.expasy.ch/prosite
belongs to
data source c

EXTERNAL2GO file based mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/EXTERNAL2GO

[description] external2go file based mapping
belongs to
evidence type c

FlyBaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/FLYBASE

[description] A Database of Drosophila Genes and Genomes - http://flybase.org/
belongs to
data source c

Fuzzy c-means clusteringni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/FCM

[description] Fuzzy c-means (FCM) is a method of clustering which allows one piece of data to belong to two or more clusters
belongs to
evidence type c

GenBankni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/GENB

[description] GenBank Nucleic Acid Sequence Database - http://www.ncbi.nlm.nih.gov/Genbank/
belongs to
data source c

Gene Ontologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/GO

[description] The Gene Ontology project is a major bioinformatics initiative with the aim of standardizing the representation of gene and gene product attributes across species and databases. - http://www.geneontology.org/
belongs to
data source c

Gene Ontology Annotationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/GOAEBI

[description] The GOA project aims to provide high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI) and is a central dataset for other major multi-species databases; such as Ensembl and NCBI. - http://www.ebi.ac.uk/GOA/
belongs to
data source c

Gene Reference Into Functionni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/GeneRIF

[description] GeneRIF provides a simple mechanism to allow scientists to add to the functional annotation of genes described in Entrez Gene. - http://www.ncbi.nlm.nih.gov/projects/GeneRIF
belongs to
data source c

GeneDBni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/GENEDB

[description] The GeneDB project is a core part of the Sanger Institute Pathogen Sequencing Unit's (PSU) activities. - http://www.genedb.org/
belongs to
data source c

GO 2 EC importni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IMPGE

[description] GO 2 EC import
belongs to
evidence type c

GrainGenesni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/GrainGenes

[description] A database for Triticeae and Avena - http://wheat.pw.usda.gov/GG2/index.shtml
belongs to
data source c

Grameneni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/GR

[description] A Resource for Comparative Grass Genomics - http://www.gramene.org/
belongs to
data source c

H-InvDBni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/HINVDB

[description] H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. - http://hinvdb.ddbj.nig.ac.jp/ahg-db/index.jsp
belongs to
data source c

HMMER based mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/HMMER

[description] HMMER based mapping
belongs to
evidence type c

HOMologous STRucture Alignment Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/HOMSTRAD

[description] HOMSTRAD (HOMologous STRucture Alignment Database) is a curated database of structure-based alignments for homologous protein families. - http://tardis.nibio.go.jp/homstrad
belongs to
data source c

Homology-derived Secondary Structure of Proteinsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/HSSP

[description] The HSSP database is a database of homology-derived secondary structure of proteins. - http://swift.cmbi.kun.nl/gv/hssp/
belongs to
data source c

HUGO Gene Nomenclature Committeeni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/HGNC

[description] Gene Nomenclature Committee HUGO symbols - Giving unique and meaningful names to every human gene. - http://www.genenames.org/
belongs to
data source c

Human Protein Reference Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/HPRD

[description] The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome. - http://www.hprd.org/
belongs to
data source c

Human Unidentified Gene-Encodedni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/HUGE

[description] The HUGE protein database has been created to publicize the fruits of our Human cDNA project at the Kazusa DNA Research Institute. - http://www.kazusa.or.jp/huge/
belongs to
data source c

ImMunoGeneTics Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/IMGT

[description] IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. - http://www.ebi.ac.uk/imgt/
belongs to
data source c

Imported from automatically curated databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IMPD_AUTOMATICALLY_CURATED

[description] imported from (automatically curated) database e.g. UniProt/TrEMBLE
belongs to
evidence type c

Imported from databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IMPD

[description] imported from database
belongs to
evidence type c

Imported from manually curated databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IMPD_MANUALLY_CURATED

[description] imported from (manually curated) database e.g. UniProt/Swiss-Prot
belongs to
evidence type c

Inferred by Association of Genotype from Phenotypeni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IAGP

[description] Polymorphism or segregation of genetic markers eg. isozymes, RFLPs (Random Fragment Length Polymorphism), RAPDs (Random amplified polymorphic DNA), AFLPs (Amplified Fragment Length Polymorphism), SNPs (Single Nucleotide Polymorphisms), Microsatellite markers or SSR (Simple Sequence Repeats), TD (Transposon Display). http://www.gramene.org/plant_ontology/evidence_codes.html#IAGP
belongs to
evidence type c

Inferred by Curatorni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IC

[description] To be used for those cases where an annotation is not supported by any evidence, but can be reasonably inferred by a curator from other GO annotations, for which evidence is available.
belongs to
evidence type c

Inferred by transformationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/InferredByTransformation

belongs to
evidence type c

Inferred from Biological aspect of Ancestorni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IBA

[description] A type of phylogenetic evidence whereby an aspect of a descendent is inferred through the characterization of an aspect of a ancestral gene.
belongs to
evidence type c

Inferred from Direct Assayni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IDA

[description] Inferred from: Enzyme assays - In vitro reconstitution (e.g. transcription) - Immunofluorescence (for cellular component) - Cell fractionation (for cellular component) - Physical interaction/binding assay (sometimes appropriate for cellular component or molecular function)
belongs to
evidence type c

Inferred from Electronic Annotationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IEA

[description] Annotations based on "hits" in sequence similarity searches, if they have not been reviewed by curators (curator-reviewed hits would get ISS)
belongs to
evidence type c

Inferred from Experimentni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/EXP

[description] This code is used in an annotation to indicate that an experimental assay has been located in the cited reference, whose results indicate a gene product's function, process involvement, or subcellular location (indicated by the GO term). The EXP code is the parent code for the IDA, IPI, IMP, IGI and IEP experimental codes.
belongs to
evidence type c

Inferred from Expression Patternni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IEP

[description] Covers cases where the annotation is inferred from the timing or location of expression of a gene. Expression data will be most useful for process annotation rather than function. For example, several of the heat shock proteins are thought to be involved in the process of stress response because they are upregulated during stress conditions.
belongs to
evidence type c

Inferred from Genetic Interactionni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IGI

[description] Includes any combination of alterations in the sequence (mutation) or expression of more than one gene/gene product. This code can therefore cover any of the IMP experiments that are done in a non-wild-type background, though we prefer to use it only when all mutations are documented.
belongs to
evidence type c

Inferred from Genomic Contextni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IGC

[description] This evidence code can be used whenever information about the genomic context of a gene product forms part of the evidence for a particular annotation. Genomic context includes, but is not limited to, such things as identity of the genes neighboring the gene product in question (i.e. synteny), operon structure, and phylogenetic or other whole genome analysis.
belongs to
evidence type c

Inferred from Key Residuesni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IKR

[description] A type of phylogenetic evidence characterized by the loss of key sequence residues. Annotating with this evidence codes implies a NOT annotation. This evidence code is also referred to as IMR (inferred from Missing Residues).
belongs to
evidence type c

Inferred from Mutant Phenotypeni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IMP

[description] Anything that is concluded from looking at variations or changes, such as mutations or abnormal levels of the product(s), of a single gene of interest is IMP (compare IGI). Use this code for experiments that use antibodies or other specific inhibitors of RNA or protein activity, even though no gene may be mutated (the rationale is that IMP is used where an abnormal situation prevails in a cell or organism due to the alteration of the sequence or expression of one gene)
belongs to
evidence type c

Inferred from Physical Interactionni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IPI

[description] Covers physical interactions between the gene product of interest and another molecule (or ion, or complex). For functions such as protein binding or nucleic acid binding, a binding assay is simultaneously IPI and IDA; IDA is preferred because the assay directly detects the binding. We thought that experiments detecting only antibody binding were not suitable as evidence for function or process (note that an effect of an antibody on an activity or process can support a function or process annotation, using the IMP code).
belongs to
evidence type c

Inferred from Rapid Divergenceni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IRD

[description] A type of phylogenetic evidence characterized by rapid divergence from ancestral sequence. Annotating with this evidence codes implies a NOT annotation.
belongs to
evidence type c

Inferred from Reviewed Computational Analysisni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/RCA

[description] This code is used for annotations based on a non-sequence-based computational method, where the results have been reviewed by an author or a curator. As noted above, IEA should be used for any computational annotations that are not checked for accuracy by a curator (or by the authors of a paper describing such analysis), and sequence comparisons that have been reviewed use ISS. For microarray results alone, IEP is preferred, but RCA is used when microarray results are combined with results of other types of large-scale experiments.
belongs to
evidence type c

Inferred from Sequence Alignmentni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/ISA

belongs to
evidence type c

Inferred from Sequence Modelni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/ISM

belongs to
evidence type c

Inferred from Sequence or Structural Similarityni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/ISS

[description] Use this code for BLAST (or other sequence similarity detection method) results that have been reviewed for accuracy by a curator. If the result has not been reviewed, use IEA. ISS can also be used for sequence similarities reported in published papers, if the curator thinks the result is reliable enough. When the gene is a "homologue of," can infer fairly detailed function and location (cellular component) but err on the side of low resolution for processes. For recognized domains, attribution to any of the ontologies will probably be at low resolution.
belongs to
evidence type c

Inferred from Sequence Orthologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/ISO

belongs to
evidence type c

InParanoidni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/INPARANOID

[description] Eukaryotic Ortholog Groups. - http://inparanoid.sbc.su.se/
belongs to
data source c

InParanoid based mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/INPARA

[description] InParanoid based identification of ortholog groups of proteins between pairs of species.
belongs to
evidence type c

Institute for Ageing and Healthni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/IAH

[description] Institute for Ageing and Health, Newcastle University - http://www.ncl.ac.uk/iah/
belongs to
data source c

IntActni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/INTACT

[description] IntAct provides a freely available, open source database system and analysis tools for protein interaction data. All interactions are derived from literature curation or direct user submissions and are freely available. - http://www.ebi.ac.uk/intact
belongs to
data source c

International Protein Indexni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/IPI

[description] IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. - http://www.ebi.ac.uk/IPI
belongs to
data source c

International Rice Genome Sequencing Projectni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/IRGSP

[description] The International Rice Genome Sequencing Project (IRGSP), a consortium of publicly funded laboratories, was established in 1997 to obtain a high quality, map-based sequence of the rice genome using the cultivar Nipponbare of Oryza sativa ssp. japonica. It is currently comprised of ten members: Japan, the United States of America, China, Taiwan, Korea, India, Thailand, France, Brazil, and the United Kingdom. The IRGSP adopts the clone-by-clone shotgun sequencing strategy so that each sequenced clone can be associated with a specific position on the genetic map and adheres to the policy of immediate release of the sequence data to the public domain. In December 2004, the IRGSP completed the sequencing of the rice genome. The high-quality and map-based sequence of the entire genome is now available in public databases. - http://rgp.dna.affrc.go.jp/IRGSP/
belongs to
data source c

InterProni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/IPRO

[description] A database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences. - http://www.ebi.ac.uk/interpro
belongs to
data source c

Japan Chemical Substance Dictionaryni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NIKKAJI

[description] An organic compound dictionary database prepared by the Japan Science and Technology Agency (JST). - http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.html
belongs to
data source c

Japan Consortium for Glycobiology and Glycotechnology DataBaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/JCGGDB

[description] Large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc. - http://jcggdb.jp/index_en.html
belongs to
data source c

Joint Genome Instituteni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/JGI

[description] The U.S. Department of Energy Joint Genome Institute, supported by the DOE Office of Science, unites the expertise of five national laboratories - Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest - along with the HudsonAlpha Institute for Biotechnology to advance genomics in support of the DOE missions related to clean energy generation and environmental characterization and cleanup. - http://www.jgi.doe.gov/
belongs to
data source c

Kazusa DNA Research Instituteni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/KAZUSA

[description] Japanese Genetics Institute - http://www.kazusa.or.jp
belongs to
data source c

Kmeans clustering basedni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/kmeans

[description] k-means clustering
belongs to
evidence type c

KNApSAcKni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/KNApSAcK

[description] KNApSAcK: A Comprehensive Species-Metabolite Relationship Database. - http://kanaya.naist.jp/KNApSAcK/
belongs to
data source c

Kyoto Encyclopedia of Genes and Genomesni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/KEGG

[description] KEGG (Kyoto Encyclopedia of Genes and Genomes) is a bioinformatics resource for linking genomes to life and the environment. - http://www.genome.jp/kegg/
belongs to
data source c

LIGANds Data Base Open and eXtensibleni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/LIGANDBOX

[description] LigandBox (Ligand Data Base Open and eXtensible), a database of small chemical compounds, has been developed by Japan Biological Informatics Consortium (JBIC) as one component of the molecular simulation system, myPresto, in "Structural Proteomics Project" commissioned by the government of Japan. - http://presto.protein.osaka-u.ac.jp/LigandBox/
belongs to
data source c

LipidBankni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/LIPIDBANK

[description] The official database of Japanese Conference on the Biochemistry of Lipids (JCBL). - http://lipidbank.jp/
belongs to
data source c

Lipidomics Gatewayni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/LIPIDMAPS

[description] Lipidomics Gateway: a free, comprehensive website for researchers interested in lipid biology. - http://www.lipidmaps.org/
belongs to
data source c

Locus tagni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/LOCUSTAG

[description] Systematic submitter supplied reference number for ORF or CDS within a completed genome
belongs to
data source c

LycoCycni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/LYCOCYC

[description] Developed by the Solanaceae Genomics Network, LycoCyc is a catalog of known and/or predicted biochemical pathways from tomato (Solanum lycopersicum). - http://pathway-dev.gramene.org/gramene/lycocyc.shtml
belongs to
data source c

Macromolecular Structure Database Groupni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MSDchem

[description] MSDchem: Consistent and enriched library of ligands, small molecules and monomers that are referred as residues and hetgroups in any PDB entry. - http://www.ebi.ac.uk/msd-srv/msdchem
belongs to
data source c

Maize Genetics and Genomics Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/maizeGDB

[description] MaizeGDB is the community database for biological information about the crop plant Zea mays ssp. mays. Genetic, genomic, sequence, gene product, functional characterization, literature reference, and person/organization contact information are among the datatypes accessible through this site. - http://www.maizegdb.org/
belongs to
data source c

Manual curationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/M

[description] Manual curation
belongs to
evidence type c

Medline Subject Headingsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MeSH

[description] MeSH is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. - http://www.nlm.nih.gov/mesh/
belongs to
data source c

Mendel - plant gene nomenclatureni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MENDEL

[description] The Mendel database contains names for plant-wide families of sequenced plant genes for Commission on Plant Gene Nomenclature (CPGN). - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC29857/
belongs to
data source c

MEROPSni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MEROPS

[description] The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. - http://merops.sanger.ac.uk/
belongs to
data source c

MeSH 2 CAS importni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/IMPM

[description] MeSH 2 CAS import
belongs to
evidence type c

MetaCycni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MC

[description] MetaCyc is a database of nonredundant, experimentally elucidated metabolic pathways. MetaCyc contains more than 1400 pathways from more than 1800 different organisms, and is curated from the scientific experimental literature. - http://metacyc.org/
belongs to
data source c

miRBase - the microRNA databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MIRBASE

[description] The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). - http://microrna.sanger.ac.uk
belongs to
data source c

Molecular INTeraction databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MINT

[description] MINT focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. - http://mint.bio.uniroma2.it/mint/
belongs to
data source c

Mouse Genome Informaticsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MGI

[description] MGI: the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data for researching human health. - http://www.informatics.jax.org/
belongs to
data source c

Munich Information Center for Protein Sequencesni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/MIPS

[description] The Munich Information Center for Protein Sequences (MIPS) is a research center hosted at the Institute for Bioinformatics (IBI) at Neuherberg, Germany with a focus on genome oriented bioinformatics, in particular on the systematic analysis of genome information including the development and application of bioinformatics methods in genome annotation, gene expression analysis and proteomics. - http://mips.gsf.de/
belongs to
data source c

National Center for Biotechnology Informationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NCBI

[description] National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health. - http://www.ncbi.nlm.nih.gov/
belongs to
data source c

National Institute for Technology and Evaluationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NITE

[description] National Institute for Technology and Evaluation - http://www.nite.go.jp/index-e.html
belongs to
data source c

National Library Of Medicineni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NLM

[description] The Library collects materials and provides information and research services in all areas of biomedicine and health care. - http://www.nlm.nih.gov/
belongs to
data source c

NCBI DNA/RNA sequence databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NC_NM

[description] NCBI DNA/RNA sequence from REFSEQ (National Center for Biotechnology Information) - http://www.ncbi.nlm.nih.gov/RefSeq/
belongs to
data source c

NCBI GE GeneID databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NC_GE

[description] These GeneID values are specific for the ENTREZGENE database at the National Center for Biotechnology Information (THIS IS ABSOLUTELY NOT THE SAME AS: NC_GI) - http://www.ncbi.nlm.nih.gov/gene
belongs to
data source c

NCBI GI GeneID databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NC_GI

[description] National Center for Biotechnology Information Gene ID - http://www.ncbi.nlm.nih.gov/entrez/query/static/help/genefaq.html
belongs to
data source c

NCBI protein sequence databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NC_NP

[description] NCBI protein sequence from REFSEQ (National Center for Biotechnology Information) - http://www.ncbi.nlm.nih.gov/RefSeq/
belongs to
data source c

NCI Chemical Carcinogen Repositoryni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NCI

[description] The National Cancer Institute (NCI) contracts with MRI to operate a repository that supplies standard reference-grade compounds for cancer research. - http://www.mriresearch.org/WorkingWithMRI/NCIRepository.asp
belongs to
data source c

Neighborhood Mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/NB

[description] Neighborhood based mapping
belongs to
evidence type c

No biological Data availableni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/ND

[description] Used for annotations to "unknown" molecular function, biological process, or cellular component.
belongs to
evidence type c

Non-traceable Author Statementni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/NAS

[description] Database entries that don't cite a paper (e.g. UniProt Knowledgebase records, YPD protein reports) - Statements in papers (abstract, introduction, or discussion) that a curator cannot trace to another publication
belongs to
evidence type c

Not Recordedni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/NR

[description] Used for annotations done before curators began tracking evidence types (appears in some legacy annotations).
belongs to
evidence type c

Online Mendelian Inheritance in Manni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/OMIM

[description] OMIM, Online Mendelian Inheritance in Man, a database of human genes and genetic disorders developed by staff at Johns Hopkins and hosted on the Web. - http://www.ncbi.nlm.nih.gov/omim
belongs to
data source c

Oryzabaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/Oryzabase

[description] The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan. The database is originally aimed to gather as much knowledge as possible ranging from classical rice genetics to recent genomics and from fundamental information to hot topics. - http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp
belongs to
data source c

Pearson product-moment correlationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/PearsonsPMC

[description] Pearson product-moment correlation
belongs to
evidence type c

Pfamni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PFAM

[description] Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains and families. - http://pfam.sanger.ac.uk/
belongs to
data source c

PHI-baseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PHI

[description] Pathogen - Host Interaction database - http://www.phibase.org
belongs to
data source c

Phytozomeni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PHYTOZOME

[description] Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. - http://www.phytozome.net
belongs to
data source c

Phytozome Poplar DBni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PHYTOZOME-POPLAR

[description] Poplar specific data on Phytozome which is a joint project of the Department of Energy's Joint Genome Institute and the Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. - http://www.phytozome.net
belongs to
data source c

Plant Metabolic Pathway Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PLANTCYC

[description] PlantCyc provides access to manually curated or reviewed information about shared and unique metabolic pathways present in over 250 plant species. - http://www.plantcyc.org/
belongs to
data source c

Plant Ontologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PO

[description] Ontologie that describe plant structures and growth and developmental stages, providing a semantic framework for meaningful cross-species queries across databases. - http://www.plantontology.org/
belongs to
data source c

Plant TFDBni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PlnTFDB

[description] Plant Transcription factor databasePlnTFDB (2.0) is a public database arising from efforts to identify and catalogue all Plant genes involved in transcriptional control. - http://plntfdb.bio.uni-potsdam.de/v2.0/
belongs to
data source c

Poplar DB at JGIni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/Poplar-JGI

[description] Poplar database at JGI which is the U.S. Department of Energy Joint Genome Institute, - http://www.jgi.doe.gov/
belongs to
data source c

ProDomni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PRODOM

[description] ProDom is a comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases. - http://prodom.prabi.fr/prodom/current/html/home.php
belongs to
data source c

Protein Data Bankni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PDB

[description] A Resource for Studying Biological Macromolecules - The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. - http://www.pdb.org
belongs to
data source c

Protein fingerprintsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PRINTS

[description] A compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. - http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS
belongs to
data source c

Protein Information Resourceni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PIR

[description] The Protein Information Resource (PIR) is an integrated public bioinformatics resource to support genomic, proteomic and systems biology research and scientific studies. - http://pir.georgetown.edu
belongs to
data source c

PSI-MI Ontologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PSI-MIO

[description] Proteomics Standards Initiative - Molecular Interactions Ontology. - http://www.psidev.info/
belongs to
data source c

PubChemni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PUBCHEM

[description] Free database of chemical structures of small organic molecules and information on their biological activities. - http://pubchem.ncbi.nlm.nih.gov/
belongs to
data source c

PubMedni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/PubMed

[description] PubMed comprises more than 19 million citations for biomedical articles from MEDLINE and life science journals. Citations may include links to full-text articles from PubMed Central or publisher web sites. - http://www.ncbi.nlm.nih.gov/pubmed/
belongs to
data source c

Rat Genome Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/RGD

[description] The Rat Genome Database is a collaborative effort between leading research institutions involved in rat genetic and genomic research. - http://rgd.mcw.edu/
belongs to
data source c

Reactomeni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/REAC

[description] A curated knowledgebase of biological pathways. - http://www.reactome.org
belongs to
data source c

Repository of Single Nucleotide Polymorphismni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/RSNP

[description] A system of databases documenting the influence of mutations in regulatory gene regions onto DNA interaction with nuclear proteins. - http://wwwmgs.bionet.nsc.ru/mgs/systems/rsnp
belongs to
data source c

RESID - Database of Protein Modificationsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/RESID

[description] The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications. - http://www.ebi.ac.uk/RESID/
belongs to
data source c

RHEA - Reaction Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/RHEA

[description] Rhea is a reaction database, where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest). - http://www.ebi.ac.uk/rhea/
belongs to
data source c

S/MAR transaction DataBaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SMARTDB

[description] S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix. - http://smartdb.bioinf.med.uni-goettingen.de
belongs to
data source c

Saccharomyces Genome Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SGD

[description] SGD is a scientific database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast. - http://www.yeastgenome.org/
belongs to
data source c

Sanger Instituteni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SA

[description] The Sanger Institute is a genome research institute primarily funded by the Wellcome Trust. - http://www.sanger.ac.uk/
belongs to
data source c

Sequence Ontologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SO

[description] The Sequence Ontology is a set of terms and relationships used to describe the features and attributes of biological sequence. - http://www.sequenceontology.org/
belongs to
data source c

SGD_Silencedni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/SGD_Silenced

belongs to
evidence type c

SGD_Uncharacterizedni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/SGD_Uncharacterized

belongs to
evidence type c

SGD_Verifiedni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/SGD_Verified

belongs to
evidence type c

Simple Modular Architecture Research Toolni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SMART

[description] SMART (a Simple Modular Architecture Research Tool) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures. More than 500 domain families found in signalling, extracellular and chromatin-associated proteins are detectable. - http://smart.embl-heidelberg.de/
belongs to
data source c

Sol Genomics Networkni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SGN

[description] See webpage http://solgenomics.net
belongs to
data source c

SoyCycni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SOYCYC

[description] This is the first version of the SoyCyc Soybean Metabolic Pathway Database. - http://www.soybase.org:8082/
belongs to
data source c

Spearman's rank correlationni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/SpearmansRCC

[description] Spearman's rank correlation
belongs to
evidence type c

Stochastic modellingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/STOCHASTIC

[description] Used for concepts and relations that have been electronically inferred using a stochastic modelling approach.
belongs to
evidence type c

Structural Classification of Proteinsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SCOP

[description] The SCOP database, created by manual inspection and abetted by a battery of automated methods, aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known. - http://scop.mrc-lmb.cam.ac.uk/scop/
belongs to
data source c

SWISS-MODELni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/SMOD

[description] SWISS-MODEL is a fully automated protein structure homology-modeling server, accessible via the ExPASy web server, or from the program DeepView (Swiss Pdb-Viewer). - http://swissmodel.expasy.org/
belongs to
data source c

Synonymous mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/2SYN

[description] Synonymous mapping
belongs to
evidence type c

Text mining based mappingni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/TM

[description] Text mining
belongs to
evidence type c

The Arabidopsis Information Resourceni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TAIR

[description] The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. - http://www.arabidopsis.org/
belongs to
data source c

The Database of Arabidopsis Transcription Factorsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/DATF

[description] The Database of Arabidopsis Transcription Factors (DATF) collects all arabidopsis transcription factors (totally 1922 Loci; 2290 Gene Models) and classifies them into 64 families. - http://datf.cbi.pku.edu.cn
belongs to
data source c

The Database of Poplar Transcription Factorsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/DPTF

[description] The Database of Poplar Transcription Factors (DPTF) collects all poplar transcription factors (totally 2576 TF) and classifies them into 64 families. - http://dptf.cbi.pku.edu.cn
belongs to
data source c

The Institute for Genomic Researchni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TIGR

[description] The Institute for Genomic Research (TIGR) was a non-profit genomics research institute founded in 1992 by Craig Venter in Rockville, Maryland, United States. It is now a part of the J. Craig Venter Institute. - http://www.tigr.org
belongs to
data source c

The Rat Genome Database. RATMAPni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/RATMAP

[description] The Rat Genome Database RatMap is focused on presenting rat genes, DNA-markers, QTLs etc that is localized to chromosome. - http://ratmap.gen.gu.se/
belongs to
data source c

The Vertebrate Genome Annotation databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/VEGA

[description] The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality manual annotation of vertebrate finished genome sequence. - http://vega.sanger.ac.uk
belongs to
data source c

The Zebrafish Information Networkni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/ZFIN

[description] ZIRC is the Zebrafish International Resource Center, an independent NIH-funded facility providing a wide range of zebrafish lines, probes and health services. - http://zfin.org
belongs to
data source c

Traceable Author Statementni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/TAS

[description] Anything in a review article where the original experiments are traceable through that article (material from introductions to non-review papers will sometimes meet this standard; discussion sections should usually be regarded with greater skepticism) - Anything found in a text book or dictionary; usually text book material has become common knowledge (e.g. "everybody" knows that enolase is a glycolytic enzyme).
belongs to
evidence type c

Trait Ontologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TO

[description] It is a controlled vocabulary to describe each trait as a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature individual. Examples are glutinous endosperm, disease resistance, plant height, photosensitivity, male sterility, etc. - http://www.gramene.org/plant_ontology/ontology_browse.html#to
belongs to
data source c

TRANSCompelni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TRANSCOMPEL

[description] Composite regulatory elements are found in many promoters and enhancers of eukaryotic genes. They consist of two binding sites of two different transcription factors, which through this combination form a module with new regulatory properties. Composite elements frequently serve as integration sites of two (or more) signaling pathways. - http://www.biobase-international.com/pages/index.php?id=transcompel
belongs to
data source c

Transcription Regulatory Regions Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TRRD

[description] TRRD is a unique information resource, accumulating information on structural and functional organization of transcription regulatory regions of eukaryotic genes. Only experimentally confirmed information is included into TRRD. - http://wwwmgs.bionet.nsc.ru/mgs/gnw/trrd
belongs to
data source c

TRANSFACni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TF

[description] BIOBASE TRANSFAC Professional: The most comprehensive collection of eukaryotic gene regulation data - http://www.biobase-international.com/pages/index.php?id=transfac
belongs to
data source c

Transitiveni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/TRANS

[description] TRANSITIVE
belongs to
evidence type c

TRANSPATHni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TP

[description] BIOBASE Transpath Database: TRANSPATH is a database system about gene regulatory networks that combines encyclopedic information on signal transduction with tools for visualization and analysis. - http://www.biobase.de/
belongs to
data source c

Transport Classification Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TC

[description] The TC-DB website details a comprehensive classification system for membrane transport proteins known as the Transport Classification (TC) system. - http://megaman.ucsd.edu/tcdb
belongs to
data source c

TRANSProni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/TRANSPRO

[description] Promoter sequences are defined according to the annotated transcription start sites (TSS), which are retrieved and clustered by a proprietary algorithm to distinguish alternative promoters of individual genes. TRANSPro is a necessary resource for systematic promoter analysis of co-regulated genes. Known transcription factor binding sites are indicated. - http://www.biobase-international.com/index.php?id=transpro
belongs to
data source c

UM-BBD_reactionIDni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UM-R

[description] UM-BBD_reactionID
belongs to
data source c

UM-Eni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UM-E

[description] UM-BBD_enzymeID
belongs to
data source c

UM-Pni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UM-P

[description] UM-BBD_pathwayID
belongs to
data source c

unclassified data sourceni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UC

[description] The data source cannot be classified. This is for example the case for concepts merged together from different CVs.
belongs to
data source c

Unified Medical Language Systemsni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UMLS

[description] The purpose of NLM's Unified Medical Language System (UMLS) is to facilitate the development of computer systems that behave as if they "understand" the meaning of the language of biomedicine and health. To that end, NLM produces and distributes the UMLS Knowledge Sources (databases) and associated software tools (programs) for use by system developers in building or enhancing electronic information systems that create, process, retrieve, integrate, and/or aggregate biomedical and health data and information, as well as in informatics research. By design, the UMLS Knowledge Sources are multi-purpose. They are not optimized for particular applications, but can be applied in systems that perform a range of functions involving one or more types of information, e.g., patient records, scientific literature, guidelines, public health data. The associated UMLS software tools assist developers in customizing or using the UMLS Knowledge Sources for particular purposes. The lexical tools work more effectively in combination with the UMLS Knowledge Sources, but can also be used independently.
belongs to
data source c

UniGene - An Organized View of the Transcriptomeni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UNIGENE

[description] Each UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location. - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene
belongs to
data source c

UniParcni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UNIPARC

[description] UniProt Archive (UniParc) is part of UniProt project. It is a non-redundant archive of protein sequences extracted from public databases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, PIR-PSD, EMBL, EMBL WGS, Ensembl, IPI, PDB, PIR-PSD, RefSeq, FlyBase, WormBase, H-Invitational Database, TROME database, European Patent Office proteins, United States Patent and Trademark Office proteins (USPTO) and Japan Patent Office proteins. - http://www.ebi.ac.uk/uniparc/
belongs to
data source c

UniProt Taxonomy Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/NEWT

[description] NEWT is the taxonomy database maintained by the UniProt group. It integrates taxonomy data compiled in the NCBI database and data specific to the UniProt Knowledgebase. - http://www.uniprot.org/help/taxonomy
belongs to
data source c

UniProtKBni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UNIPROTKB

[description] UniProtKB is protein sequence database consisting oftwo sections 1. Swiss-Prot, which is manually annotated and reviewed; 2. TrEMBL, which is automatically annotated and not reviewed - http://www.uniprot.org/
belongs to
data source c

UniProtKB/Swiss-Protni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UNIPROTKB-SwissProt

[description] UniProtKB/Swiss-Prot is a reviewed and manually-annotated protein sequence database. - http://www.uniprot.org/
belongs to
data source c

UniProtKB/TrEMBLni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UNIPROTKB-TrEMBL

[description] UniProtKB/TrEMBL is a computer-annotated and not reviewed protein sequence database. - http://www.uniprot.org/
belongs to
data source c

University of Manchesterni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UMan

[description] Britain's largest single-site university with a proud history of achievement and an ambitious agenda for the future. - http://www.manchester.ac.uk/
belongs to
data source c

University of Minnesota Biocatalysis/Biodegradation Databaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UMBBD

[description] This database contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. - http://umbbd.msi.umn.edu
belongs to
data source c

University of Washington Multimegabase Sequencing Centerni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/UWASH

[description] Washington University School of Medicine in St. Louis - http://www.genome.washington.edu/uwgc/
belongs to
data source c

unknown data sourceni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/unknown

[description] When the data source is unknown, e.g. data parsed from excel spreadsheets not part of a particular database or consortium.
belongs to
data source c

Up-Down-Assayni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/evidences/UpDownAssay

belongs to
evidence type c

Virtual Ontologyni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/VO

[description] Virtual Ontology, a temporary ontology with no permanent representation outside ONDEX.
belongs to
data source c

Wikipediani back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/WIKI

[description] Wikipedia, the free encyclopedia that anyone can edit. - http://wikipedia.org
belongs to
data source c

WordNetni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/WN

[description] WordNet is a large lexical database of English, developed under the direction of George A. Miller. Nouns, verbs, adjectives and adverbs are grouped into sets of cognitive synonyms (synsets), each expressing a distinct concept. - http://wordnet.princeton.edu/
belongs to
data source c

WormBaseni back to ToC or Named Individual ToC

IRI: http://knetminer.org/data/rdf/terms/biokno/dataSources/WB

[description] WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and some related nematodes. - http://www.wormbase.org
belongs to
data source c

Legend back to ToC

c: Classes
op: Object Properties
dp: Data Properties
ni: Named Individuals